5YVD,4S1T,2GTH,2GTI,2H85,2OZK,2RHB,4RS4,6WLC


Conserved Protein Domain Family
M_cv-Nsp15-like

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cd21165: M_cv-Nsp15-like 
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middle domain of coronavirus Nonstructural protein 15 (Nsp15), and related proteins
Nidovirus endoribonucleases (NendoUs) are uridylate-specific endoribonucleases, which release a cleavage product containing a 2',3'-cyclic phosphate at the 3' terminal end. NendoUs include Nsp15 from coronaviruses and Nsp11 from arteriviruses, both of which may participate in the viral replication process and in the evasion of the host immune system. Coronavirus Nsp15 NendoUs have an N-terminal domain, a middle (M) domain and a C-terminal catalytic (NendoU) domain. Coronavirus Nsp15 from Severe Acute Respiratory Syndrome Coronavirus (SARS-CoV), human Coronavirus 229E (HCoV229E), and Murine Hepatitis Virus (MHV) form a functional hexamer. Oligomerization of Porcine DeltaCoronavirus (PDCoV) Nsp15 differs from that of the other coronavirus members; it has been shown to exist as a dimer and a monomer in solution.
Statistics
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PSSM-Id: 439160
Aligned: 31 rows
Threshold Bit Score: 125.078
Created: 13-Oct-2021
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5YVD_A         65 SHPDFKLLHNLQADICYkFVLWDYeRSNIYGTATIgVCKY-TDIDvnsaLNICFDIRDnCSLEKFMSTpNAIFISDRKIK 143  Middle East r...
P0C6Y3       6056 TLPNNRILKGLGVDVTNgFVIWDYtNQTPLYRNTVkVCAY-TDIEpn-gLIVLYDDRY-GDYQSFLAAdNAVLVSTQCYK 6132 Avian infecti...
AWV67124     5718 SLPTTQLLSGLGVTATRnFTVWLD-DDTIFQYTIN-VSTY-TDVDpn-tHVVLCDDRYgTDWSQFNQLpNAVFLTKTKVK 5793 Sparrow delta...
QCB65096     5939 NVPNTKILLGLGVDVTHgFSIWDYeNSSVVFRNTVkCCPY-TDIDss-sLCVLFDDRYkGALQQFLSAdNAVLISTQCYK 6016 Canada goose ...
QAT77247     2077 STLTTSILSGLVLSSMG-CDNGTTqTKHPLYRNTVkVCGLiQTMEpn-gLIFLYDDRY-GDYHTFLAAdNAVLVLHSVIM 2153 Infectious br...
YP_002308496 5745 ALPTTQLLAGLGVTATRnFTIWVD-DDTVFQHTVN-VSTY-TDCDpn-lHVVLCDDRYgTDWSQFNQMpNAVFLTKTKVK 5820 Thrush corona...
YP_005352853 5712 SLPTTQLLSGLGVTATRnFTVWVD-DDTAFTNTVN-VSTY-TDVDpt-nHLVLCDDRYgTDWGQFNQLpNAVFLTATKVK 5787 Magpie-robin ...
AKC54434     5726 SLPTTQLLSGLGVTATRnFTVWFD-NDTIFQYTIN-VSTY-TDIDps-tHVVLCDDRYgTDWSQFNQLpNAVFLTKTKVK 5801 Porcine delta...
YP_005352862 5736 TIPSISLLASLGITCTRnFTVWRE-NDTVFTNTIN-VSAY-TDVLpd-kYTVLMDERYgTSYSEFCQYdNAVFLSPFLYK 5811 Night heron c...
YP_005352870 5667 SIPTASLLTGLGVNTTVnFTVWLN-GDTLFSQTVN-VSTY-TDVIn--nDVCLLDERYkSTLSDFLKLdNAVFISPTQYK 5741 Wigeon corona...
5YVD_A        144 k-YPCMVGpDYAYFNGAIIRdsdvvkqpVKFYLYKKVNNEFIDPTECIYTQ 193  Middle East respiratory syndrome-related c...
P0C6Y3       6133 rySYVEIPsNLLVQNGIPLKd------gANLYVYKRVNGAFVTLPNTLNTQ 6177 Avian infectious bronchitis virus (strain ...
AWV67124     5794 --KAEPFVcRALTLNGLAIDg-------DELYIYLRQNNQLTTFTTMCTQG 5835 Sparrow deltacoronavirus
QCB65096     6017 kyPFISLPfYVQEQNGFTLQs------gEALFVYKRVKGKFLNLPQTLYTR 6061 Canada goose coronavirus
QAT77247     2154 --SSYVQEnRNFCQNGMPLKd------gANLYVYKRSNGAFVTLPTTLNTQ 2196 Infectious bronchitis virus
YP_002308496 5821 --KTVPFIcTALTLNGVAIDg-------DELYIYYRKDNQLINFTTILTQG 5862 Thrush coronavirus HKU12-600
YP_005352853 5788 --KTEPFVcTALTLNGTAIEg-------SELYIYKRLNGQLVTFDTICTQG 5829 Magpie-robin coronavirus HKU18
AKC54434     5802 --KTEPFIcTALTLNGLAIDg-------EELYIYVRYNNQLTTFSTTCTQG 5843 Porcine deltacoronavirus
YP_005352862 5812 --KAKPIViTFLTKNGVRVYd-------CTLYIYWRYNGEFQQITDTLYSQ 5853 Night heron coronavirus HKU19
YP_005352870 5742 --KYGATPiSQLQQCGNPVYg-------DLIYLYVRRDGKIVQPSVDYYTQ 5783 Wigeon coronavirus HKU20
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