5YVD,5DA1,4RS4,7K1L,7K1O


Conserved Protein Domain Family
NendoU_nv

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cd21158: NendoU_nv 
Click on image for an interactive view with Cn3D
Nidoviral uridylate-specific endoribonuclease (NendoU) domain of coronavirus Nonstructural protein 15 (Nsp15), arterivirus Nsp11, torovirus endoribonuclease, and related proteins
Nidovirus endoribonucleases (NendoUs) are uridylate-specific endoribonucleases which release a cleavage product containing a 2',3'-cyclic phosphate at the 3' terminal end. NendoUs include Nsp15 from coronaviruses and Nsp11 from arteriviruses, both of which may participate in the viral replication process and in the evasion of the host immune system. This family also includes torovirus NendoUs. Except for turkey coronavirus (TCoV) Nsp15, Mn2+ is generally essential for the catalytic activity of coronavirus Nsp15. Mn2+ is dispensable, and to some extent inhibits the activity of arterivirus (Porcine Reproductive and Respiratory Syndrome virus) PRRSV Nsp11. Coronavirus Nsp15 from Severe Acute Respiratory Syndrome Coronavirus (SARS-CoV), human Coronavirus 229E (HCoV229E), and murine hepatitis virus (MHV) form a functional hexamer while Porcine DeltaCoronavirus (PDCoV) Nsp15 has been shown to exist as a dimer and monomer in solution. Nsp11 from the arterivirus PRRSV is a dimer. NendoUs are distantly related to Xenopus laevis Mn(2+)-dependent uridylate-specific endoribonuclease (XendoU) which is involved in the processing of intron-encoded box C/D U16 small, nucleolar RNA.
Statistics
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PSSM-Id: 439157
Aligned: 6 rows
Threshold Bit Score: 156.266
Created: 13-Oct-2021
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
catalytic siteputative active
Conserved site includes 3 residues -Click on image for an interactive view with Cn3D
Feature 1: catalytic site [active site], 3 residue positions
Conserved feature residue pattern:H H KClick to see conserved feature residue pattern help
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                               #                #                     
5YVD_A     191 YTQSRSc-sDFLPLsDMEKDFlsfdsdvfikkyglenyAFEHVVYGDFSHt--TLGGLHLLIGlykrqqeghiIMEEMlk 267  Middle East resp...
5DA1_A     103 FSTGRIevdCREYLdDRERVVa---------------eSLPHAFIGDVKGt--TVGGCHHVTSky-------lPRFLPk- 157  Porcine reproduc...
4RS4_A     196 YTQGRNl-qDFLPRsTMEEDFlnmdmgvfiqkygledfNFEHVVYGDVSKt--TLGGLHLSISqvrlskmgilKAEEFva 272  Human coronaviru...
AIU41583  6304 FSTGRLynlEHDPSlNFNVHQlpve----------tipKNKHVFAGDFTEvgtDIGGVHHVVAln-------gYKGTIip 6366 Porcine torovirus
7K1L_A     218 FTQSRNl-qEFKPRsQMEIDFlelamdefieryklegyAFEHIVYGDFSHs--QLGGLHLLIGlakrfkespfELEDFip 294  Severe acute res...
7K1O_A     218 FTQSRNl-qEFKPRsQMEIDFlelamdefieryklegyAFEHIVYGDFSHs--QLGGLHLLIGlakrfkespfELEDFip 294  Severe acute res...
Feature 1                         #                                                         
5YVD_A     268 g-ssTIHNYFITETntaAFKAvCSVIDLKLDDFVMILKsqd-lgVVSKVVKVPIDLTMIEFMLWCkdg-qvQTFYPR 341  Middle East respira...
5DA1_A     158 ---eSVAVVGVSSPg-kAAKAvCTLTDVYLPDLEAYLHp----eTQSRCWKVMLDFKEVRLMVWKd-----KTAYFQ 221  Porcine reproductiv...
4RS4_A     273 asdiTLKCCTVTYLndpSSKTvCTYMDLLLDDFVSVLKsld-ltVVSKVHEVIIDNKPWRWMLWCkdn-avATFYPQ 347  Human coronavirus 229E
AIU41583  6367 n-yvKPIGTGLINVg-kAVKR-TTLVDVCANQLYEKVRqqlvgvKVSKVIFVNIDFQEVQFMVFAnseddiQTFYPQ 6440 Porcine torovirus
7K1L_A     295 m-dsTVKNYFITDAqtgSSKCvCSVIDLLLDDFVEIIKsqd-lsVVSKVVKVTIDYTEISFMLWCkdg-hvETFYPK 368  Severe acute respir...
7K1O_A     295 m-dsTVKNYFITDAqtgSSKCvCSVIDLLLDDFVEIIKsqd-lsVVSKVVKVTIDYTEISFMLWCkdg-hvETFYPK 368  Severe acute respir...

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