3D79


Conserved Protein Domain Family
PUA_MJ1432-like

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cd21154: PUA_MJ1432-like 
PUA RNA-binding domain of MJ1432, TA1423, PH0734, and similar proteins
The RNA-binding PUA (PseudoUridine synthase and Archaeosine transglycosylase) domain was detected in a number of proteins involved in RNA metabolism. Members of this mostly archaeal family have not been characterized functionally; they may bind to RNA. This family includes Pyrococcus horikoshii PH0734 where the N-terminal domain may modulate the binding target of the C-terminal PUA domain using its characteristic electropositive surface.
Statistics
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PSSM-Id: 409296
Aligned: 57 rows
Threshold Bit Score: 114.523
Created: 23-Jan-2012
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
putative RNA
Conserved site includes 14 residues -Click on image for an interactive view with Cn3D
Feature 1:putative RNA binding site [nucleic acid binding site]
Evidence:
  • Comment:many PUA domains have been shown to bind RNA, and although detailed interactions vary, they all seem to share a common surface patch that is associated with binding
  • Comment:by similarity to other members of this family

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1            #     # ### ###                                             ##   ####    
3D79_A     93 WPRRVVVDeGAVPHILNGADVMAPGIVDADEGiKEGDFVFVVEEkYGRPLAIGIALmSGKVMKekNRGKAVKVIHHaRDK 172 Pyrococcus horikoshii
BAJ47605   48 RLASVWVDmGAVPRVASGADVMRPGIVKMDVF-RTGDVVLVRDVtHSKPLAVGQALmSSEEAStlSKGKVVKNLHHvDDI 126 uncultured crenarc...
ABZ09293   70 KFPYVIVDiGAIKFVCKGANVMRPGITKFSNF-EKGEIVCVIEEsQHKFLAVGKAEmPSRQLDdtNKGEVIKNMHYiSDI 148 uncultured marine ...
Q97TZ1     67 NLPYVIIDeGAVKAVSKGADLFAPGIVEYNCEcKENEIVLAKTK-TNLPVAVLRVLmPKEKALveKKGKFALNLHHiGDK 145 Sulfolobus solfata...
CBT17208   68 SFPSVKVDeGAVRAVLKGADLFVPGIKEYNCNcKPGDIIAVTTM-EGKAIAVMKVLiSKEDAEkeKKGKFSKNLHYlGDE 146 Acidianus ambivalens
TRO53956   69 LLPSVVVDmGAIPYVCNGADVMAPGIKEMVEAfEEGDIVVVRDItHRKALAVGKALkSSAEIEasKKGRAIQNLHYvGDK 148 Candidatus Bathyar...
PUA32925   81 RMPSVIVDmGAVPHIANGADVMRPGIVALEGEfCEGGLVVVRDErYRKPIAIGKALkGSEDMLraERGKVVINLHYvGDK 160 Aigarchaeota archa...
RLE88055   82 EIPKVVVDkGAVPHILNGADVMRPGIVTFEGDfKKGDLVAICEEeKGRAIALGRALfSRMEIEsmKRGKVVENLHYiKDR 161 Thermoprotei archaeon
ABU81206  114 EGPSVVVDkGAVPYVTRGADVMRPGIISFEGDfKKGDVVLVRSEnLKFPIAVGLALyDKEEAEkmERGKVIKNLHYlGDD 193 Ignicoccus hospita...
OYT61555   81 PWPSVTVDeGAVPYIRRGADVMRPGIVKVEGDfVKGDVVAVKECkYGKPIALGLALhTSEELLglKRGRVIRNLHYlGDD 160 Thermofilum sp. ex...
Feature 1         
3D79_A    173 IWEV 176 Pyrococcus horikoshii
BAJ47605  127 VWRM 130 uncultured crenarchaeote 10-H-08
ABZ09293  149 FWES 152 uncultured marine crenarchaeote HF4000_APKG7F19
Q97TZ1    146 IWEM 149 Sulfolobus solfataricus
CBT17208  147 IWKM 150 Acidianus ambivalens
TRO53956  149 LWKL 152 Candidatus Bathyarchaeota archaeon
PUA32925  161 VWKL 164 Aigarchaeota archaeon NZ13_MG1
RLE88055  162 VWNF 165 Thermoprotei archaeon
ABU81206  194 LFKL 197 Ignicoccus hospitalis KIN4/I
OYT61555  161 IWNM 164 Thermofilum sp. ex4484_15

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