1BWD


Conserved Protein Domain Family
amidinotransferase_StrB1-like

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cd21135: amidinotransferase_StrB1-like 
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L-arginine:inosamine-phosphate amidinotransferase StrB1 from Streptomyces griseus (StrB1) and similar proteins
This subfamily includes inosamine-phosphate amidinotransferase (EC 2.1.4.2; also called inosamine amidinotransferase or inosamine-P amidinotransferase or scyllo-inosamine-4-phosphate amidinotransferase or L-arginine:inosamine phosphate amidinotransferase) from Streptomyces griseus (StrB1), among others. Inosamine-phosphate amidinotransferase catalyzes two non-consecutive transamidination reactions; it converts scyllo-inosamine 4-phosphate into N-amidino-scyllo-inosamine 4-phosphate, and N1-amidinostreptamine 6-phosphate into streptidine 6-phosphate. L-arginine:inosamine-phosphate amidinotransferase StrB1 is structurally similar to the human L-arginine:glycine amidinotransferase (AT), with residues involved in substrate binding and catalysis conserved in AT and StrB1 at equivalent topological positions, suggesting a similar reaction mechanism among amidinotransferases. This subfamily also includes putative inosamine-phosphate amidinotransferase 2 (StrB2), also called aminocyclitol amidinotransferase or inosamine-phosphate amidinotransferase II, from Streptomyces glaucescens. It is unclear if StrB2 participates in streptomycin biosynthesis as it contains an arginine residue instead of the nucleophilic cysteine that is a key residue for amidine transfer.
Statistics
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PSSM-Id: 439147
Aligned: 11 rows
Threshold Bit Score: 533.926
Created: 22-Jan-2020
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 14 residues -Click on image for an interactive view with Cn3D
Feature 1:putative chemical substrate binding site [chemical binding site]
Evidence:
  • Comment:based on the structure of human L-arginine:glycine amidinotransferase with bound arginine ligand
  • Citation:PMID 9922132
  • Citation:PMID 9266688

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
1BWD_A         3 LVSVHneWDPLEEVIVGTAVgarvptadrsvfaveya-gdyesqeqipsgaypdRVLKETEEELHVLAAELTKlgvTVRR 81  Streptomyces gr...
P08078         3 LVSVHneWDPLEEVIVGTAVgarvptadrsvfaveya-gdyesqeqipsgaypdRVLKETEEELHVLAAELTKlgvTVRR 81  Streptomyces gr...
Q54258         3 LVSVHneWDPLEEIIVGTAVgarvpradrsvfaveya-deydsqdqvpagpypdRVLKETEEELHVLSEELTKlgvTVRR 81  Streptomyces gl...
P29780         3 LVGVHneWDPLEEVVVGTARrpcagpdrsllaveyaeyagpgrwqevptgpypdRALKETEDELEELCEELRGlgvTVRR 82  Streptomyces gr...
WP_091302408   3 LVDVHteWDALEEIVVGTVSgaqvpvtdrslvaaey--gdiddpgeiqtgpypqHVLEQTEAELEELVGLLTGlgvKVRR 80  Micromonospora ...
WP_026270178   3 LVDVHneWDPLEEVVIGTLTggripsadrsllaief--adlgsadripsgpfpaHVVEQTNEELEDICAELTKlgiNVRR 80  Salinispora are...
TKB10177       3 LVNVHneWDPLEEVLVGTAVgarvplgdkglftiry--sdyenidtipsgphnsRILGETEEDLNAIIEAFEKqgvVVRR 80  Mesorhizobium sp.
VFK61249       3 AVNVHneWDPIEEIIVGTAInarlpgpdisvhavdf--peleklgeipfgpfpaHVIEETEEDLNAFIEVLQNldiKVRR 80  Candidatus Kent...
WP_123583038   3 LVNVHneWDPLEEMIVGVASgarvplpdkglfaldys-ehhtyqeeipsgpypeQVIEEATEDLDAFAAFLVShgvTVRR 81  Pseudomonas bra...
WP_116532124  18 LVNVNneWDPLEEVLVGTAIgaqvpkgdkglfairy--seyesinamptgprstRIIEETEEDLDAIIHALIAqgvTVRR 95  Microvirga sp. ...
Q54264         3 LAGVYteWDPLEEIVVGTAVgs------------------------------enRMVRETEDELDGLCEELRGlgvTVRR 52 
Feature 1                               # ##                                                     
1BWD_A        82 PGPRDhsALIKTpdWETDGfhDYCPRDgLLSVGqTIIETPMALRsRFLESLAYkDLLLEYFASgSRWLSAPKPRLTDdsy 161 Streptomyces gr...
P08078        82 PGPRDhsALIKTpdWETDGfhDYCPRDgLLSVGqTIIETPMALRsRFLESLAYkDLLLEYFASgSRWLSAPKPRLTDdsy 161 Streptomyces gr...
Q54258        82 PGQRDnsALVATpdWQTDGfhDYCPRDgLLAVGqTVIESPMALRaRFLESLAYkDILLEYFASgARWLSAPKPRLADemy 161 Streptomyces gl...
P29780        83 PGARDsaAPVRTpdWESDGygDLCPRDgLLVVGdTVIEAPMALRaRFLESLAYkELLVEYLAAgSRWISAPKPRLAEgmy 162 Streptomyces gr...
WP_091302408  81 PGGRDhkSMVSTpdWSSDGfhDYCPRDgFLAVGnMLIESPMVLRsRFLEGFAYkDLFVEYLNSgARWLSAPKPQLTDdly 160 Micromonospora ...
WP_026270178  81 PEARDiaATIATsdWQTDGfyDYCPRDvLLTVGeTVIEPPMVLRsRYLETMAYrSMLLEFLQSgSRWISAPKPRLHDemy 160 Salinispora are...
TKB10177      81 PNPTDqaAIFSTpdWQSDGmyDYCPRDiMLPVGnTIIETPMSLRsRFLEPFAYkDLLVEYMKSgARWLSAPKPRLLDtmy 160 Mesorhizobium sp.
VFK61249      81 PKVVDhsKTFKTpdWETDSlyNYCPRDiILAIGdMIIKAPSPLRsRFLETTAYkSIFIDYLLSgSRWISAPKPKLLDdcy 160 Candidatus Kent...
WP_123583038  82 PETSDhaAVFGTpeWQTDGeyNYCPRDvLLPIGqTIIEAPMALRsRYFEPFAYrKHVQDYFASgANWISAPKPQLADsty 161 Pseudomonas bra...
WP_116532124  96 PAPTDhsAGFKTpdWEADGmyNYCPHDiMLPIGnTIVETPMSMRfRFFEPFAYkDLLIEYMKSgARWISAPKPQLLDsmy 175 Microvirga sp. ...
Q54264        53 LPPQDpaSPPAPpdRGADTalAYRPRDgLLTVGeTVIQTPAVPGlPSLQSPACrMLLMEYFTSgSRWISAPPPVLTDvmy 132
Feature 1                           #                                              # ##          
1BWD_A       162 apqapagERLTDEEPVFDAANVLRFgtDLLYLVSdsGNELGAKWLQSAVGd-tYTVHPCRKLYasTHVDSTIVPLRpgLV 240 Streptomyces gr...
P08078       162 apqapagERLTDEEPVFDAANVLRFgtDLLYLVSdsGNELGAKWLQSAVGd-tYTVHPCRKLYasTHVDSTIVPLRpgLV 240 Streptomyces gr...
Q54258       162 eptapagQRLTDLEPVFDAANVLRFgtDLLYLVSdsGNELGAKWLQSALGs-tYKVHPCRGLYasTHVDSTIVPLRpgLV 240 Streptomyces gl...
P29780       163 spsgpsgERLRDLEPVFDAANVLRLgtDLLYLVSdsGNELGARWLQSALGa-aYTVHPCRGLYssTHIDSTLVPLRpgLV 241 Streptomyces gr...
WP_091302408 161 dptaplgQRLRDLEPVFDAANVLRFgtDVLYQVSdsGNKLGARWLQAVLGe-qYTVHACEGLYpsTHIDSTITPLRpgLV 239 Micromonospora ...
WP_026270178 161 dpaapggQRLRDLEPAFDAANILRFgtDLLYLVSdtGNPLGAQWLQSSLGd-rYTVHTCYDLYasTHVDSTVVPLRpgLV 239 Salinispora are...
TKB10177     161 nntdpsrSALLEHEPVFDAANCLRVgrDILYLVSdtGNMLGAQWLQNTLGp-dYRVHPLENLYasTHIDTTITLLRagLV 239 Mesorhizobium sp.
VFK61249     161 ekpdssgICLKNQEPIFDAANILRIgrDILYLISnsGNQLGAQWLQTMLGkdkYRIHTCYNVYnhKHIDTTFAFLRpgLV 240 Candidatus Kent...
WP_123583038 162 rvnpsegSIIANDEPIFDAANVLRIgrDILYLVSrsGNQQGYEWLKRVLGd-qYRVHAVSGIYdgTHLDTTITLVRpgLV 240 Pseudomonas bra...
WP_116532124 176 natdpeqSALLEHEPVFDAANCLRIgrDILYQVSdtGNKLGAEWLQSTLGd-dYRVHPCDDLYaaTHIDTTISLLRpsLV 254 Microvirga sp. ...
Q54264       133 dptapagERLRELEPVFDADTVLRIgtDLLYLVSdsGNALGARWLQAALGe-rYTVHPCRGPHgsPHGDFAVVPLGpgLI 211
Feature 1             #                                 ##      #                                
1BWD_A       241 LTNpSRVNd-eNMPDFLRsWENITCPELVDIGFtgdkphCSVWIG-MNLLVVRpdLAVVDrrQTALIRLLEKHgMNVLPL 318 Streptomyces gr...
P08078       241 LTNpSRVNdenMPDFLRS-WENITCPELVDIGFtgdkphCSVWIG-MNLLVVRpdLAVVDrrQTALIRLLEKHgMNVLPL 318 Streptomyces gr...
Q54258       241 LVNpARVNddnMPDFLRS-WQTVVCPELVDIGFtgdkphCSVWIG-MNLLVVRpdLAVVDrrQTGLIKVLEKHgVDVLPL 318 Streptomyces gl...
P29780       242 LVNpARVTddnLPGVLRT-WQRIECPALAGLGYagdvphCSTWIG-MSLLVVRpgLVVVDsrHRELMRVLERHgVDVLPL 319 Streptomyces gr...
WP_091302408 240 MVNpARVNdanMPEFLRG-WDRIECPELVDTGFvgkhprGSVWIG-MNFLVTApgQAIVDrrQTDLIRVLESHkVEVIPS 317 Micromonospora ...
WP_026270178 240 LLNpERVHegnVPSFLKS-WDRIWCPDLVETAYlgdrphCSKWIG-MNLLVIRpgLVLVDdrQPELIRVLEAHgIQTLPK 317 Salinispora are...
TKB10177     240 LVNpSRVRpdnLPKIFKN-WEVLEAPEPIDIGFtgv-ayGSAWIS-MNFMMVNpnLAMVDknQTPLIKLLEKHqIDCIPL 316 Mesorhizobium sp.
VFK61249     241 IVNpERINn-dNMPDLIKsWDKIWCPEMIDVGYvgkmslSTAWIG-MNLLMVNpnLAIVEkrQINLIKIIEKHgIDVIPL 318 Candidatus Kent...
WP_123583038 241 VLNpERIRedqIPEIFKN-WDIIWSPEMVDTGYcwsyprASIWQG-MNFIMVNpsLAVINdqQVPLIRALEKHgVDVAPL 318 Pseudomonas bra...
WP_116532124 255 LVNpSRISernLPSIFKK-WDVLYAPDPVDIGYaev-ayGSAWIFsMNLLMVDpnLAMVDksQTPLINLLEKHkIDCIPL 332 Microvirga sp. ...
Q54264       212 LVNpERVDaehIPPFLRT-WKRIVCPELVDPGPpdgavhSSGWGG-SNILVVRpgLVIVDrrQADLMRVLENNgIDVLPL 289
Feature 1                #   ##              
1BWD_A       319 qlTHSRTLGGGFHCATLDVRRTgaLETY 346 Streptomyces griseus
P08078       319 qlTHSRTLGGGFHCATLDVRRTa-RETY 345 Streptomyces griseus
Q54258       319 qlTHSRTLGGGFHCATLDVRRTgsLETY 346 Streptomyces glaucescens
P29780       320 klTHARMLGGGFHGVTLDIRRTgaLETY 347 Streptomyces griseus
WP_091302408 318 qlTHARSLGGGFHCVTLDVRRRgeLATY 345 Micromonospora halophytica
WP_026270178 318 rlTHARSLGGSFHCVSLDIRRSgkPESY 345 Salinispora arenicola
TKB10177     317 qlRHGRTLGGGFHCVTLDVRRRgiLEDY 344 Mesorhizobium sp.
VFK61249     319 qlRHPRTLGGGFHCATVDIRRKgtLEKY 346 Candidatus Kentron sp. TUN
WP_123583038 319 kmRHARSLSGGFHCVSVDIRRRgtLEDY 346 Pseudomonas brassicacearum
WP_116532124 333 qlRHARTLSDGFHCVTLDVRRTgsLEDC 360 Microvirga sp. KLBC 81
Q54264       290 qlTHARALGSGFHRVTVDVRRTgtLESY 317

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