Conserved Protein Domain Family
SPASM_AlbA-like

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cd21125: SPASM_AlbA-like 
Iron-sulfur cluster-binding SPASM domain of antilisterial bacteriocin subtilosin biosynthesis protein AlbA and similar proteins
Bacillus subtilis antilisterial bacteriocin subtilosin biosynthesis protein AlbA is a radical S-adenosylmethionine (SAM) enzyme that catalyzes the formation of three thioether bonds in the post-translational modification of a linear peptide into the cyclic peptide subtilosin A. The thioether bonds formed are between the sulfur of three cysteine residues and the alpha-carbons of two phenylalanines and one threonine to produce a rigid cyclic peptide. Radical SAM enzymes are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster that is involved in the reductive cleavage of SAM and generates a 5'-deoxyadenosyl radical, which in turn abstracts a hydrogen from the appropriately positioned carbon atom of the substrate. Radical SAM enzymes with a C-terminal SPASM domain contain at least one other iron-sulfur cluster. AlbA appears to contain one auxillary Fe-S cluster, similar to the auxillary 4Fe-4S cluster in Bacillus circulans butirosin biosynthetic enzyme BtrN.
Statistics
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PSSM-Id: 410616
Aligned: 7 rows
Threshold Bit Score: 123.37
Created: 22-Jan-2020
Updated: 25-Oct-2021
Structure
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Aligned Rows:
 
putative Fe-S
Feature 1: putative Fe-S cluster binding site [ion binding site], 4 residue positions
Conserved feature residue pattern:C C C CClick to see conserved feature residue pattern help
Evidence:
  • Comment:based on the structure of Bacillus circulans butirosin biosynthetic enzyme BtrN with bound auxillary 4Fe-4S cluster
  • Comment:likely binds a 4Fe-4S cluster at this site

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          #                 #                                           #    #          
P71011       342 ANCGAGwKSIVISPfGEVRPCAlf--pkEFSLGNIFhdsYESIFNSp-lVHKLWQAQAprfSEHCmkDKCPFSGYCg-GC 417 Bacillus subtil...
WP_015761324 301 RNCGAGcKSLSVDAdGTIYPCHmlh-rpELAMGNAFtdaVLDALQTd--VSRTFQTLDaekFEDC--GTCRYLRICggGC 375 Eggerthella lenta
WP_013010424 317 FCCGTGkSTLNIDMkGNVFPCHllh-etMFLLGNVIeesFASIICNpvlNDIRVHTYD---IDEC--SDCHFMSICggGC 390 Denitrovibrio a...
YP_002248014 202 YRCPAGtEKITIMSdGSVYPCYllarfeEYKIGNIFkdsLSEILSSp--KLEIFKTYD---GNIChnKICNYYEECrsGC 276 Thermodesulfovi...
WP_012863770 299 VGCGLGcKMVSIAAnGEVYPCHmlh-kdTMKMGDIKtdsLKNILKN---KESIWSHMTvdnVKGC--SSCDYKYMCggGC 372 Veillonella par...
NP_391617    342 ANCGAGwKSIVISPfGEVRPCAlf--pkEFSLGNIFhdsYESIFNSp-lVHKLWQAQAprfSEHCmkDKCPFSGYCg-GC 417 Bacillus subtil...
WP_012547100 350 ENCGAGwRTFVLGPdGNLRICVnsp-itLFKIGNIFe-eGAKILKNk--ILEELSEIPlprYESC--KNCKFYAFCn-NC 422 Dictyoglomus th...
Feature 1                              
P71011       418 YLKGLnsnk--yhrKNICSWAK 437 Bacillus subtilis subsp. subtilis str. 168
WP_015761324 376 RARSLfesgnleskDSYCLMTQ 397 Eggerthella lenta
WP_013010424 391 KAAVYkkygrfdkpDPECSALK 412 Denitrovibrio acetiphilus
YP_002248014 277 IAHSIihygthrkpDPRCNLKK 298 Thermodesulfovibrio yellowstonii DSM 11347
WP_012863770 373 RGRSYlydnvidnkDPFCMLTK 394 Veillonella parvula
NP_391617    418 YLKGLnsnk--yhrKNICSWAK 437 Bacillus subtilis subsp. subtilis str. 168
WP_012547100 423 IVKAVit------aKNYDKCEW 438 Dictyoglomus thermophilum

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