2NRJ,5GHE,4K1P,6GRK,6GY6,6EZV


Conserved Protein Domain Family
ClyA-like

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cd21116: ClyA-like 
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family of the cytolysin A (ClyA) family alpha pore-forming toxins (alpha-PFT) including Bacillus cereus HblB, Aeromonas hydrophila AhlB, Bacillus thuringiensis Cry6Aa and similar proteins
This family belongs to the ClyA family of alpha-PFT bacterial toxins. PFTs form the major group of virulence factors in many pathogenic bacteria and in general are critical components of the molecular offensive and defensive machinery of cells in all kingdoms of life. Bacterial PFTs facilitate the takeover of host resources by puncturing holes in the membrane. PFTs can be classified as alpha-PFTs and beta-PFTs depending on the secondary structures of their membrane component. Alpha-PFTs use a ring of amphipathic helices while beta-PFTs use a beta-barrel to construct the pore. Members of this family include the toxins: Bacillus cereus hemolysin binding component B (HblB or HBL-B) of the diarrheal enterotoxin hemolysin BL, Aeromonas hydrophila hemolytic (Ahl) component B (AhlB) of the tripartite AhlABC toxin, Vibrio cholerae cytotoxin motility associated killing factor A (MakA) cytotoxin, Xenorhabdus nematophila alpha-xenorhabdolysin (XaxA), Bacillus thuringiensis crystal 6Aa (Cry6Aa) parasporal crystal (Cry) toxin, and Bacillus cereus non-hemolytic enterotoxin (Nhe) component A (NheA) of the non-hemolytic enterotoxin Nhe, which, despite its name, is hemolytic, among others. In solution, ClyA proteins have an elongated, almost entirely alpha-helical structure, except for a short hydrophobic beta-hairpin known as the beta-tongue. Pore formation by ClyA requires circular oligomerization of the toxin by a sequential mechanism. This, in turn, concentrates the amphipathic helices in the center of the ring-like structure, forming a helical barrel that inserts into the membrane by a wedge-like mechanism. Compared with ClyA, NheA is almost entirely alpha-helical with an enlarged "head" domain, and an enlarged beta-tongue; it has been proposed that NheA could even form beta-barrel pores. Alpha-PFTs with similar structures are increasingly being found in eukaryotes, in particular as components of the immune systems of animals. This family may be distantly related to Escherichia coli alpha-PFT hemolysin E (HlyE, also known as ClyA or SheA).
Statistics
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PSSM-Id: 439149
Aligned: 117 rows
Threshold Bit Score: 58.5787
Created: 23-Dec-2019
Updated: 13-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2NRJ_A         26 LQKAGLFAKSXNAYSYXLIKnpdvnfegitingyvdlpGRIVQDQKNARAHAVTWDTKVKKQLLDTLNGIVEYDTTFDNy 105  Bacillus cereus
WP_095578592   20 AQDTAAARAAVDAYATAMREqspik---------ldllPNLPTHLENAKEHAKSWTEKVAPEIIQVNTDLISFCNLFKSf 90   Streptomyces ...
KXJ22064      348 QVDLTKSSTVIQTYVQIILQqxdlk---------ldalPDLPKHQQTARAHGNTWKDTILPLMAKTDADIIDYANKFNAf 418  
PFX30253      709 QKDVFDASAAIQTYVAAILRqpdik---------ldqlPDLPNFQKTARQHAQNWLDQVLPAIITTNADIIDYANGFASf 779  Stylophora pi...
KXJ22064       12 AKELFNASAAVQTYVAAILQqpdik---------lkelPDLPSYQATARNHAENWTSQVLPAIIRSNSDIIDFAHQFESf 82   
SHL84819       23 AKDAASARAVVEAYVTMVLEqptvk---------ldkiKHLEQYQTAAKDHATAWRNTVSQKLIQTNTDLLAFANNFDSy 93   Streptomyces ...
GAU65834       23 AQHTGAHRALVDTYATNVLEqpavk---------ldklTDVEKYQTSAKAHATSWRDSVSGLLIGANTDLMSFSNSFTSf 93   Streptomyces ...
WP_128347699   23 ADASTTAAVIIQNYVGTILTqadls--------lpdilPDLPEHQAKARDHATSWRDVIQPQMISTNTDIVSFSNNFDSy 94   Enterobacter ...
XP_029200895   16 LNGVVDANTVVSYYCKSIIAqndik---------ltalENLPAHQNTARKHAQHWQKSVEPKIQQCFADTVNFSSAFLGk 86   Acropora mill...
PFX30266       18 QVEVTKASTVIQTYVSIILQqpdle---------ldalPNLSAHQKTARDHANNWNDTILPLMSKTDADIIDYANKFDSf 88   Stylophora pi...
2NRJ_A        106 yETXVEaint--------gdgeTLKEGITDLRGEIQQNQKYAQQLIEELTKLrdsIGHDVRAFGSNKELLQSilknqgad 177  Bacillus cereus
WP_095578592   91 yKTLYDlakdin----aegnleKFNSGITELSEEVTKRGESAKKATKSINGLysnVATDKGKLTKDINDEEAkyqgeqgk 166  Streptomyces ...
KXJ22064      419 yEDLLKlandln----nadsrkKFVEGLKLLQNTIKKKDANVAQVVKDLSSFhtnLDTDYQNFESDVNKAAVkiegdsge 494  
PFX30253      780 yRTLVKlaekidt--gdksqlkEFTQGLVLLRNNLNRKDEQAKYTEIQLQNFkaeVSVDHEHFNKEATKVTKklegsdgd 857  Stylophora pi...
KXJ22064       83 yDTLHKlaeeida--xkmdglkSFKDGLDILRSNVSRKKTNANYLNLQLEDFkskLSADHENFSKEVSTAAKtlegndgk 160  
SHL84819       94 yDDLVDiaenih----aegmraEFVEGVQDLLSEIEKRQQNAQDALKALNTFrgdVDTDHGHFVDLSNDAHSsyegdkge 169  Streptomyces ...
GAU65834       94 yNPLMSmaqnit----agdnraQFVKGLQILVSQIEDKRTKADGALDALKSFrndVADDHGHFLELAAKAKSlyegdkgv 169  Streptomyces ...
WP_128347699   95 yDTLVKlavkiqqnpsdtasinTFKLGVQQLQALVAQKQTATHNVVNSVGGFqttLAEDARNFASDFTTAEAalagkdgq 174  Enterobacter ...
XP_029200895   87 yHHLNSlidqmkn--gnqqaknKFTSTIRTLTVKLDAVVSNAKDVTTDVEQFsqkLNQDTRNFKSDSEEAETkiigdned 164  Acropora mill...
PFX30266       89 yNDLVTyakdik----tpqskkNLIEVLKLLGTTIKQKNANVQVVVKDLSTFhanLNTDYQNFHSDVNQAAVkiegdsge 164  Stylophora pi...
2NRJ_A        178 vdadqkrleevlgsvnyykqlesdgfnvxkg------------------------ailglpiiggiivgvardnlgklep 233  Bacillus cereus
WP_095578592  167 laeikklesslrdrihkdvlimaggatvdvvgvlciavgvlaeipsggtstavivagvalvtggtaamiaagvdmdkank 246  Streptomyces ...
KXJ22064      495 ikslsneldainnamdkdiglmaggavtivagigmivfgaiseipsggmstaligggvlvvsagtvmetmgstdysqqie 574  
PFX30253      858 lakissridtidgqlhtyigvmagggvgkvggiviilvgsfaeivteglsaglilagtgllvggigseitggveyalalk 937  Stylophora pi...
KXJ22064      161 lqkissdidstnsqinamigtmaggavgsvagivlilvgslaeieteglstglivagvgmlgtgitaevtggveyglaxe 240  
SHL84819      170 iaelkkkaealsegmtkdlsiiagctaaavvgglmivvgalleiptaggstavitagglvvagaatgdilgavdyenkkr 249  Streptomyces ...
GAU65834      170 isqlenrqdairqamstdltiiaggaaltvvgglaiavgllaeipsggastaivvgglaavaggtvamgvagadftskks 249  Streptomyces ...
WP_128347699  175 iaalgkqidainsamskdltmiaagstaavvgglmiavgalaeiatagvstalivgglvvvgagagvaiaggvdyakqts 254  Enterobacter ...
XP_029200895  165 lkalqdhldainkainrdigliagg------------------------------------ilsiclavaggielkkqed 208  Acropora mill...
PFX30266      165 ikalsdqldaihdaikkd---------------------------------------------------idlmaggavai 193  Stylophora pi...
2NRJ_A        234 llaelrqtvdykvtLNRVVGVAYSNINEXHKALDDAINALTYXSTQWHDLDSQYSGVLGhienaaqkadqnkfkFLKPNL 313  Bacillus cereus
WP_095578592  247 dlanqiaeyakiskEIAALKSVNTQWEHLVAACTDALGSLNKMSTTWEVLGTQFKAVKDeikeve---ekersmFLTNHL 323  Streptomyces ...
KXJ22064      575 kqkktteklagikiELTGLKTTKGQIEGFVKGLQSAIAAASSLQAAWGALDNDLQELITalqdvn----pddgsWVKDEL 650  
PFX30253      938 erkalqekltndkqGIGILKHVQSLLNGFVNQTDSAIRAVGALREDWSLLSDDLDKVIAdldkd------pgplGLVAML 1011 Stylophora pi...
KXJ22064      241 kkkklqeelxsdkqAIGILKHAKSLLDGFVSQIDAALKSIDELEKQWSVMSDDLAKVVTdl------------dNNPGSL 308  
SHL84819      250 eltatlqqiadltsEIAVLHSVEDQFKKLKDANELAAQGLTAMANTWTVLQTKFKTVIDyiddnv----tpdkhFLKAKL 325  Streptomyces ...
GAU65834      250 elaknitdladiksEIGLLSGVELQFNNLAVANEKAEQSLKSMADTWTLLHTQFNGVITklhdev---npddgpFLAYEL 326  Streptomyces ...
WP_128347699  255 alstaittktklqqQYSATKNVNTIVQNLSGQASAAVQAAGSLLAGWQTLEQDFIVFQSaltsat----pdlgyFLIAQL 330  Enterobacter ...
XP_029200895  209 akhdvelkmamerqELMALKAAKSHIDGLVESMVPNSSALTSLEGAWASLKSDFEEVAAelksls---ttsaagFLGPLL 285  Acropora mill...
PFX30266      194 vagivmiafgavteILSGGATTALIGGGFVDGLENAIMAATSLKAARQTLDADLEELITaindid---pnipsnWILDEL 270  Stylophora pi...
2NRJ_A        314 NAAKDSWKTLRTDAVTL 330  Bacillus cereus
WP_095578592  324 EAAKKDWDDLDKTAKAI 340  Streptomyces albireticuli
KXJ22064      651 DRAKRDWADALDQAKKL 667  
PFX30253     1012 NKAKGDWENALDLARRM 1028 Stylophora pistillata
KXJ22064      309 GEAVSSYPPNVQGAQSC 325  
SHL84819      326 KTAKADWEEVHKTADLI 342  Streptomyces yunnanensis
GAU65834      327 DSAKKDWESVHDTAQLV 343  Streptomyces sp. NBRC 110611
WP_128347699  331 NAAKADWDDVGNHARKL 347  Enterobacter cloacae
XP_029200895  286 ETAKKDWKVALDRAKQL 302  Acropora millepora
PFX30266      271 NRAKLDWRVALDQAKKL 287  Stylophora pistillata
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