4JDW,1BWD,5WPI


Conserved Protein Domain Family
amidinotransferase-like

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cd21113: amidinotransferase-like 
Click on image for an interactive view with Cn3D
L-arginine:glycine amidinotransferase, inosamine-phosphate amidinotransferase and similar proteins
This family contains amidinotransferase enzymes known to catalyze the transfer of the amidino group from a donor molecule (usually arginine) to an acceptor molecule bearing a primary amine. They are widespread in nature, occurring in essential metabolic pathways in eukaryotes as well as in biosynthetic pathways for antibiotics and virulence factors in prokaryotes. This family includes L-arginine:glycine amidinotransferase (EC 2.1.4.1; also called glycine amidinotransferase, arginine-glycine amidinotransferase, or arginine-glycine transamidinase), inosamine-phosphate amidinotransferase (EC 2.1.4.2; also called inosamine amidinotransferase, inosamine-P amidinotransferase, or scyllo-inosamine-4-phosphate amidinotransferase or L-arginine:inosamine phosphate amidinotransferase), and similar proteins. L-arginine:glycine amidinotransferase (AT or AGAT) catalyzes the committed step in creatine biosynthesis by formation of guanidinoacetic acid, the immediate precursor of creatine. Inosamine-phosphate amidinotransferases catalyze two nonconsecutive transamidination reactions in the biosynthesis of the streptomycin family of antibiotics. This family also includes L-arginine:inosamine-phosphate Streptomyces griseus amidinotransferase StrB1, which is structurally similar to human L-arginine:glycine amidinotransferase; AT and StrB1 share conserved residues involved in substrate binding and catalysis at equivalent topological positions, suggesting a similar reaction mechanism among amidinotransferases.
Statistics
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PSSM-Id: 439146
Aligned: 10 rows
Threshold Bit Score: 279.003
Created: 23-Dec-2019
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 14 residues -Click on image for an interactive view with Cn3D
Feature 1:chemical substrate binding site [chemical binding site]
Evidence:
  • Structure:4JDW: Human L-arginine:glycine amidinotransferase binds arginine; contacts at 4.0A
  • Citation:PMID 9218780
  • Citation:PMID 9266688

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
4JDW_A        65 PVSSYneWDPLEeVIVGRAEnacvppftievkantye------kywpfyqkqgghyfpkDHLKKAVAEIEEMCNILKTeg 138 Homo sapiens
1BWD_A         3 LVSVHneWDPLEeVIVGTAVgarvptadrsvfaveya------gdyesqeqipsgaypdRVLKETEEELHVLAAELTKlg 76  Streptomyces gr...
5WPI_A        38 PVEVYteWDPLEeVIVGIMDdirvpdwdkslkaiipe------enhdffqtysgkrfpeELLIKARQEVETLAQILQAeg 111 Erwinia amylovora
XP_957401     18 IISASneYSPLRaLIIGRAThslfpsepphmiratm-------ptlhhpefrphhpfpaDIVAKADQELDNFARVMTDrf 90  Neurospora cras...
AAM07007       5 RVNVThdWGTLKeVVVGRVIdfrypeyseklrqsvayvpekmqkqlrdyagklfsetspGDYERAVAQVENLVEFLEKrn 84  Methanosarcina ...
WP_011023559   5 RVNVThdWGTLKeVVVGRVIdfrypeyseklrqsvayvpekmqkqlrdyagklfsetspGDYERAVAQVENLVEFLEKrn 84 
XP_001242290   8 MVSADdeWSPLEsVIVGRAEhsafpsepahmieatm-------pdehqqsfkpsnpfppEILQKAQEELDNFASILEReg 80 
NP_389185     12 TVCRTe-YGTLQkVILCKPEhmtikdvi------------------------netqkhfEDDNIHVKTANDQHSRLVEa- 65 
O34497        12 TVCRTe-YGTLQkVILCKPEhmtikdvi------------------------netqkhfEDDNIHVKTANDQHSRLVEa- 65 
WP_039417071   5 LPHVTneTAPLRtVVLGLPDstggapaladt-----------------ydaksyesvlrGTYPSDGDIKIEMDAVLDV-- 65 
Feature 1                                      # ##                                              
4JDW_A       139 -vTVRRPDPIDwsLKYKTpdFESTGly-saMPRDiLIVVGnEIIEAPMAWr-sRFFEYRAYrSIIKDYFHRg------AK 209 Homo sapiens
1BWD_A        77 -vTVRRPGPRDhsALIKTpdWETDGfh-dyCPRDgLLSVGqTIIETPMALr-sRFLESLAYkDLLLEYFASg------SR 147 Streptomyces gr...
5WPI_A       112 -iRVKRPNESNhhQPIMTphFTTGGtfysaMPRDcLFAIGkKIIEVPMSWr-sRYFETFAFrDILNDYFTRg------AE 183 Erwinia amylovora
XP_957401     91 giKVYRPKEVNw-AKANEgkGGYTGa----MPRDgLMVVGrTMVEACFGWgcrRGEIELAYhDVLEDIMETarkagesVR 165 Neurospora cras...
AAM07007      85 ivIHRPRALSDeeLRAYYefSSFSGq---tYARDsMIVIGnHVIEAALRQp-wRFKERFGLrPLFEQLAAErd---chYA 157 Methanosarcina ...
WP_011023559  85 ivIHRPRALSDeeLRAYYefSSFSGq---tYARDsMIVIGnHVIEAALRQp-wRFKERFGLrPLFEQLAAErd---chYA 157
XP_001242290  81 -iRVYRPKEVN--WLKIG--GYTGA-----MPRDsLMTVGnTVIEAPFAWgcrKQEVELGYsDILSALAEDg-----lSK 145
NP_389185     66 -lRSHNVEVVL--LPVRD--GLPEQv----FTRDiGFVIGeKAFLSSMTEp-iRQGEEAVIkDFFHSQGIS-------YT 128
O34497        66 -lRSHNVEVVL--LPVRD--GLPEQv----FTRDiGFVIGeKAFLSSMTEp-iRQGEEAVIkDFFHSQGIS-------YT 128
WP_039417071  66 --LVRHGIEVL--RPEPI--ANYNQi----FARDvAFAIDdKLFVSNLIAd--RARESEAFsPIWDCVGESh-----lVR 128
Feature 1                                                                    #                   
4JDW_A       210 WTTAPKPTMAdelynqdypihs--------------vedrhklaaqgkFVTTEFePCFDAA----DFIRAgrDIFAQrsq 271 Homo sapiens
1BWD_A       148 WLSAPKPRLTddsyap--------------------------qapageRLTDEE-PVFDAA----NVLRFgtDLLYLvsd 196 Streptomyces gr...
5WPI_A       184 WIAAPKPMLSddvwekdfd---------------------feqefpfrSIITEVePLFDAA----DFMKMgrDIIGQrsh 238 Erwinia amylovora
XP_957401    166 VCRAPKIVGGdtlydglldddkpekdggakqngtiprssqngkqtsthWAINNTrPAFDCA----DFMRFgtVLIGQlsh 241 Neurospora cras...
AAM07007     158 VMPPPSPMRQe-------------------------------------DIQSGTgAYLEGG----DVFPFgkDVLVGhsq 196 Methanosarcina ...
WP_011023559 158 VMPPPSPMRQe-------------------------------------DIQSGTgAYLEGG----DVFPFgkDVLVGhsq 196
XP_001242290 146 VVRAPKILGRetlydgven---------------------cssngthtWAINNTrPSFDTA----DFMRFgkVIIGQlsn 200
NP_389185    129 RMLDTSIEGG--------------------------------------DVIIDD-DIVYVG----ISQRT--DISAI--- 160
O34497       129 RMLDTSIEGG--------------------------------------DVIIDD-DIVYVG----ISQRT--DISAI--- 160
WP_039417071 129 LSEDIHAEGG--------------------------------------DILLYDdILFIGTylqkDYPSFk-TARTN--- 166
Feature 1                                                # ##                #                   
4JDW_A       272 ---vtnYLGIEWMRRHLapdYRVHIISFKdpn------pmHIDATFNIIGpgIVLSNp-DRPCh-----QIDLFKKa--- 333 Homo sapiens
1BWD_A       197 ---sgnELGAKWLQSAVgdtYTVHPCRKLya-------stHVDSTIVPLRpgLVLTNp-SRVNd----eNMPDFLRs--- 258 Streptomyces gr...
5WPI_A       239 ---atnKKGIEWLRRTLgpdYHIHIYEFDepa------pmHIDTTILPLApgRVLIN--KGWVp-----QIPDIFKd--- 299 Erwinia amylovora
XP_957401    242 ---vtnPKGVDYLRAVLpapYTVELLNTTddh------amHIDATILPLRq-GTLIYcpSRVTeee-lrRHEVFRD---- 306 Neurospora cras...
AAM07007     197 gnfatsMKGIEWLRNYLgdeYTVHTVALGad-------ylHLDDGLATVRegLAIICp-DMFVe-----GLPDLIKg--- 260 Methanosarcina ...
WP_011023559 197 gnfatsMKGIEWLRNYLgdeYTVHTVALGad-------ylHLDDGLATVRegLAIICp-DMFVe-----GLPDLIKg--- 260
XP_001242290 201 ---vtnMKGVEYLRSVIpegYTVEILQTDdph------amHIDATILPLRn-KLMVYhpERVTeka-lrQHAVFED---- 265
NP_389185    161 ------GQLEEALPEYTi--VPVKLHEKFl----------HLDCVFNIISesEALIY--SQAIep---dAADMLAKr--- 214
O34497       161 ------GQLEEALPEYTi--VPVKLHEKFl----------HLDCVFNIISesEALIY--SQAIep---dAADMLAKr--- 214
WP_039417071 167 ------ARAVDFFREFFp-hKTIIPIELIkhdtdpmrsvlHLDCAFQPVGrgRAIVYr-QGFLhsesfgLITEIFGgrdn 238
Feature 1                                   ##     #                                             
4JDW_A       334 gWTIITPPTPiipdd-------hplwmSSKWLSmNVLMLDekRVMVDan-eVPIQKMFEKl----gITTIKVniRNANS- 400 Homo sapiens
1BWD_A       259 -WENITCPELvdigft------gdkphCSVWIGmNLLVVRpdLAVVDrr-qTALIRLLEKh----gMNVLPLqlTHSRT- 325 Streptomyces gr...
5WPI_A       300 -WEILNPPASnlpdd-------hplymSSNWIHtNVLMLDekTVIVEed-eEALISAFRQw----gFKTILCpfKHFQT- 365 Erwinia amylovora
XP_957401    307 -WDLRPLPWNpeeeeeeeedegpprymCSKWLVlNAMSVDekTIVVE----ERQERFARWleeefgMEVVRLpfRHVNS- 380 Neurospora cras...
AAM07007     261 -WEFINVTKYe----------------ALNLLAgNGMILGpnEILIDkr-lPHIAEQLDKk----gVNVHTIe-YDAITi 317 Methanosarcina ...
WP_011023559 261 -WEFINVTKYe----------------ALNLLAgNGMILGpnEILIDkr-lPHIAEQLDKk----gVNVHTIe-YDAITi 317
XP_001242290 266 -WELYAYPFTpeqkdg------pplymTSPWLVlNALSLDenRIMVE----AKDTVFASWvkekfsMEPIMCpfQHVNS- 333
NP_389185    215 -YDLIEVPED-----------------EQFTLGtNVLSIGk-KTIISlpgnRHVNQQLSKr----gYHIIEIdlSEIIK- 270
O34497       215 -YDLIEVPED-----------------EQFTLGtNVLSIGk-KTIISlpgnRHVNQQLSKr----gYHIIEIdlSEIIK- 270
WP_039417071 239 lFEITPEEAY-----------------MMNTNI-FSISPD--TVISErn-fVRLNNHLREaw---gMTVEEVp-YAEIS- 292
Feature 1         #    ##        
4JDW_A       401 LGGGf-HAWTCDVRRR 415 Homo sapiens
1BWD_A       326 LGGGf-HCATLDVRRT 340 Streptomyces griseus
5WPI_A       366 FGGSf-HCATLDVKRS 380 Erwinia amylovora
XP_957401    381 LGGSf-HCATVDLVRK 395 Neurospora crassa OR74A
AAM07007     318 FAGGl-RCSHHPLVRE 332 Methanosarcina acetivorans C2A
WP_011023559 318 FAGGl-RCSHHPLVRE 332
XP_001242290 334 IGGSf-HCATVDLVRR 348
NP_389185    271 SGGSf-RCCTMPLIRG 285
O34497       271 SGGSf-RCCTMPLIRG 285
WP_039417071 293 KQGGllRCSTMPLVRE 308

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