Conserved Protein Domain Family
DHD_Skor

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cd21080: DHD_Skor 
Dachshund-homology domain found in SKI family transcriptional corepressors, Skor1, Skor2 and similar proteins
Skor1, also known as functional Smad-suppressing element on chromosome 15 (Fussel-15), LBX1 corepressor 1, or ladybird homeobox corepressor 1, acts as a transcriptional corepressor of LBX1 and inhibits BMP signaling. Skor2, also known as functional Smad-suppressing element on chromosome 18 (Fussel-18), LBX1 corepressor 1-like protein, or ladybird homeobox corepressor 1-like protein, exhibits transcriptional repressor activity. It acts as a transforming growth factor-beta (TGF-beta) antagonist in the nervous system. The Dachshund-homology domain (DHD), also known as the N-terminal Ski/Sno/Dac domain, adopts a mixed alpha/beta structure containing a helix-turn-helix motif, similar to features found in the forkhead/winged-helix family of DNA binding proteins. It contains a conserved CLPQ motif and can bind co-factors. Its structure suggests that it may also bind DNA.
Statistics
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PSSM-Id: 410783
Aligned: 20 rows
Threshold Bit Score: 181.875
Created: 12-Feb-2019
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q2VWA4         41 VGQVILYGIPIVSLVIDGQERLCLAQISNTLLKNFSYNEIHNRRVALGITCVQCTPVQLEILRRAGAMPISSRRCGMITK 120  human
CDS26304       33 LSTFHLFGEPLACLVLNGEERLCLAQISTRLLRDFTYNEIHNRRVALGITCVQCSPPQLDLLRRVGAMPLSSRRCGTITK 112  Hymenolepis m...
KPM09450       36 VRNVMLYGIPIVSLLMDGQERLCLAQISNTLLKNFSYNEIHNRRVALGITCVQCTPVQLELLRRAGAMPVSSRRCGMITK 115  Sarcoptes sca...
XP_013418421   50 VGFVMLHGVRIVSLHIDGKERLCLAQISNTLLKDFSYNEIHNRRVALGITCVQCTPVQLEILRRAGAMPVSSRRCGMITK 129  Lingula anatina
EFX81507        2 IGTVILYGVPIVSLMMETKERLCLAQISSTLLKDYSYNEIHNRRVALGITCAQCTPVQLELLRRAGAMPVTSRRCGMITR 81   common water ...
NP_001162829   32 VSSVLLYGVQIVSLHIEGQERLCLAQISNTLLKQFSYNEIHNRRVALGITCVQCTPVQLEILRRAGAMPVSSRRCGMITR 111  fruit fly
XP_002609930   64 VRSVMLYGVPIVALVIDGKERLCLAQISNTLLKGYSYNEIHNRRVALGITCVQCTPVQLEILRRAGAMPISSRRCGMITK 143  Florida lancelet
ELT89175       28 VSSVLLHGESIVSLLMEGAERLCLAQISNTLLKEYSYNEIHNRRVALGITCIQCTPVQLEVLRRAGAMPISSRRCGMITK 107  Capitella teleta
XP_002742222   63 CRTVILNGVPIASLVIDRAERLCLAQISNTLLKGYSYNEIHNRRVALGITCVQCTPVQLEILRRAGAMPISSRRCGMITK 142  Saccoglossus ...
PIK44179       59 CHTVILFGAPIAALIMDGVERLCLAQISNILLKDYSYNEIHNRRVALGVTCVQCTPVQLEMLRRVGAMPASSRRCGMITL 138  Japanese sea ...
Q2VWA4        121 REAERLCKSFL 131  human
CDS26304      113 REAQRLVESFL 123  Hymenolepis microstoma
KPM09450      116 REAERLCKSFL 126  Sarcoptes scabiei
XP_013418421  130 REAERLVRSFL 140  Lingula anatina
EFX81507       82 REAERLCKSFL 92   common water flea
NP_001162829  112 REAERLCKSFL 122  fruit fly
XP_002609930  144 READRLCKSFL 154  Florida lancelet
ELT89175      108 REAERLVKSFL 118  Capitella teleta
XP_002742222  143 REAERLCKSFL 153  Saccoglossus kowalevskii
PIK44179      139 REAEGSNFAFD 149  Japanese sea cucumber
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