5AJ1


Conserved Protein Domain Family
WH_NTD_SMARCB1_like

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cd21055: WH_NTD_SMARCB1_like 
N-terminal winged helix DNA-binding domain found in SMARCB1, PHF10 and similar proteins
The family includes SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 (SMARCB1) and PHD finger protein 10 (PHF10), both of which have an N-terminal winged helix DNA-binding domain that is structurally related to the SKI/SNO/DAC domain found in a number of metazoan chromatin-associated proteins. SMARCB1, also termed BRG1-associated factor 47 (BAF47), or integrase interactor 1 protein (INI1), or SNF5, or SNF5L1, is a core component of the BAF (hSWI/SNF) complex, an ATP-dependent chromatin-remodeling complex that plays important roles in cell proliferation and differentiation, in cellular antiviral activities and inhibition of tumor formation. PHF10, also termed BRG1-associated factor 45a (BAF45a), or XAP135, is involved in transcription activity regulation by chromatin remodeling. It is a component of the neural progenitors-specific chromatin remodeling complex (npBAF complex) and plays a role in the proliferation of neural progenitors.
Statistics
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PSSM-Id: 411034
Aligned: 76 rows
Threshold Bit Score: 67.1462
Created: 17-Aug-2020
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5AJ1_A         15 KPVKFQLed---dGEFYMIGSEVGNYLRmfrGSLYKRYPslWRRLAtVEERKKIVASshgkktkpntkdhgyttlatSVT 91   human
XP_013411434  338 DLFEYQWpqd-ktGEWYMLQEQVSEYLEv--LSFKRKYPdlTRRPLeYLERIYLKENgvvte----------qqcdlGLS 404  Lingula anatina
PIK51701      111 KLFEYQWpq--dhGEFFFVQEQISEYLGv--TSFKRKYPalERRLIaVEERRFLKDKgvvte----------eqvtlGLT 176  Japanese sea ...
XP_006823344   57 NLYEYQWppn-kdGDMYMLQEQVSEFLAv--KSFKRKYPdlERRDIdPKERNYLREKgvvse----------iqvnlGLT 123  Saccoglossus ...
XP_785947     465 NVFEYQWpqd-npGEWYFVQEQISEFLGv--KSFKRKYPnlERRVMdIKEKEFLRERgvvte----------eqvtlGLT 531  purple sea ur...
KFM81099      147 NLFEYMWpq--enGEFFILQEQICDYLNv--KSFKRKYPdlARRTVdMDEKQFLKERgvvte----------mqcdlGLT 212  Stegodyphus m...
OWF47440      557 RVFEYQWpkd-ssGEYYMLQEQISEFLGv--KSFKRKYPelQRRPVeMNERMFLREKgavte----------tqcdlGLT 623  Yesso scallop
XP_002604468   64 NLFEYQWppd-knGDWYFVQEQVSEFLGv--KSFKRKYQdlDRRVMeMDEKQYLWEKgvvne----------aqvtlGLT 130  Florida lancelet
NP_001071881  105 NIAEYQWppd-tsGDYYMLQEQVSTYLGi--TSFKRKYPeiERRKVeADEVNHLLTShvise----------vqvtlGLT 171  vase tunicate
ELT95254      198 QIFEYQWpqgevnAEFYLLQEQISEFIGv--VSFKRKHPdlSRRSVeYDERNFLLSKgvvse----------ricdlGLT 265  Capitella teleta
5AJ1_A         92 LLKAsEVEEILDG 104  human
XP_013411434  405 PLKSeEVCDLMQK 417  Lingula anatina
PIK51701      177 ALKAdEVYDVMQK 189  Japanese sea cucumber
XP_006823344  124 ALKTdEVLDLMAK 136  Saccoglossus kowalevskii
XP_785947     532 ALRGdEVYDLMMK 544  purple sea urchin
KFM81099      213 ALRSeEVLELMSK 225  Stegodyphus mimosarum
OWF47440      624 AIRSdEVYDLMHR 636  Yesso scallop
XP_002604468  131 ALRSeEVYDLMLR 143  Florida lancelet
NP_001071881  172 ALKSsDVCDMMMK 184  vase tunicate
ELT95254      266 ILKSeEVYDLMSK 278  Capitella teleta
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