5IUE,5KNM


Conserved Protein Domain Family
IgC1_MHC_Ia_HLA-F

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cd21023: IgC1_MHC_Ia_HLA-F 
Click on image for an interactive view with Cn3D
Class Ib major histocompatibility complex (MHC) immunoglobulin domain of human leukocyte antigen (HLA) F; member of the C1-set of Ig superfamily (IgSF) domains
The members here are composed of the Class Ib major histocompatibility complex (MHC) immunoglobulin domain of human leukocyte antigen alpha chain F (HLA-F). HLA-F, encoded by the HLA-F gene in humans, belongs to the non-classical HLA class I heavy chain paralogs. This class I molecule mainly exists as a heterodimer associated with the invariant light chain beta-2-microglobulin. HLA-F molecules can interact with both activating and inhibitory receptors on immune cells, such as NK cells, and can present a diverse panel of peptides. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta-2-microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Statistics
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PSSM-Id: 409614
Aligned: 12 rows
Threshold Bit Score: 206.975
Created: 14-Mar-2019
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
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Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:Ig strand A [structural motif]
Evidence:
  • None

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1            #########                                                                   
5IUE_A       180 QRADPPKAHVAHHPISDHEATLRCWALGFYPAEITLTWQRDGEEQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTC 259 human
NP_061823    201 QRADPPKAHVAHHPISDHEATLRCWALGFYPAEITLTWQRDGEEQTQDTELVETRPAGDGTFQKWAAVVVPPGEEQRYTC 280 human
NP_001091949 201 QRADPPKAHVAHHPISDHEATLRCWALGFYPAEITLTWQRDGEEQTQDTELVETRPAGDGTFQKWAAVVVPPGEEQRYTC 280 human
XP_011512866 201 QRADPPKAHVAHHPISDHEATLRCWALGFYPAEITLTWQRDGEEQTQDTELVETRPAGDGTFQKWAAVVVPPGEEQRYTC 280 human
XP_016866299 201 QRADPPKAHVAHHPISDHEATLRCWALGFYPAEITLTWQRDGEEQTQDTELVETRPAGDGTFQKWAAVVVPPGEEQRYTC 280 human
XP_016866300 201 QRADPPKAHVAHHPISDHEATLRCWALGFYPAEITLTWQRDGEEQTQDTELVETRPAGDGTFQKWAAVVVPPGEEQRYTC 280 human
XP_016866301 201 QRADPPKAHVAHHPISDHEATLRCWALGFYPAEITLTWQRDGEEQTQDTELVETRPAGDGTFQKWAAVVVPPGEEQRYTC 280 human
XP_016866302 201 QRADPPKAHVAHHPISDHEATLRCWALGFYPAEITLTWQRDGEEQTQDTELVETRPAGDGTFQKWAAVVVPPGEEQRYTC 280 human
XP_016866303  83 QRADPPKAHVAHHPISDHEATLRCWALGFYPAEITLTWQRDGEEQTQDTELVETRPAGDGTFQKWAAVVVPPGEEQRYTC 162 human
XP_016866304  83 QRADPPKAHVAHHPISDHEATLRCWALGFYPAEITLTWQRDGEEQTQDTELVETRPAGDGTFQKWAAVVVPPGEEQRYTC 162 human
P30511       201 QRADPPKAHVAHHPISDHEATLRCWALGFYPAEITLTWQRDGEEQTQDTELVETRPAGDGTFQKWAAVVVPPGEEQRYTC 280 human
5KNM_A       180 QRADPPKAHVAHHPISDHEATLRCWALGFYPAEITLTWQRDGEEQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTC 259 human
Feature 1                          
5IUE_A       260 HVQHEGLPQPLILRWEQS 277 human
NP_061823    281 HVQHEGLPQPLILRWEQS 298 human
NP_001091949 281 HVQHEGLPQPLILRWEQS 298 human
XP_011512866 281 HVQHEGLPQPLILRWEQS 298 human
XP_016866299 281 HVQHEGLPQPLILRWEQS 298 human
XP_016866300 281 HVQHEGLPQPLILRWEQS 298 human
XP_016866301 281 HVQHEGLPQPLILRWEQS 298 human
XP_016866302 281 HVQHEGLPQPLILRWEQS 298 human
XP_016866303 163 HVQHEGLPQPLILRWEQS 180 human
XP_016866304 163 HVQHEGLPQPLILRWEQS 180 human
P30511       281 HVQHEGLPQPLILRWEQS 298 human
5KNM_A       260 HVQHEGLPQPLILRWEQS 277 human

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