6SGF


Conserved Protein Domain Family
CBM86

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cd20907: CBM86 
carbohydrate binding module family 86
This family describes what is most likely a xylan-binding module such as found in the Xyn10A protein of Roseburia intestinalis L1-82, which is involved in the extracellular capture and breakdown of xylan.
Links
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Statistics
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PSSM-Id: 411019
Aligned: 11 rows
Threshold Bit Score: 131.328
Created: 17-Aug-2020
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
carbohydratehomodimer
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:carbohydrate binding site [chemical binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                      #                            # #                              #    
6SGF_A          5 VKKVFTADQLKVAWg-DADYELa---DGQWKLSFAK-----QYNQVKWTLPEsIEMsqVNAVTFQVADqKVPISLKVYNg 75   Roseburia int...
CUN06914       40 TAKTFTAEQLEVIWg-NAEHKLe---DGQWKLSFAN-----QYDQVKWKVPEvIALsdVKSVMFHVADqKGSVTLKVYNg 110  Roseburia faecis
CRL34489       47 KKTTYTADKLTVDWg-NAGYELt---DGVWKVTFNN-----QYDQVKWRLPEtVDMstVKSVTFNVKDqKGSVSLKVYKn 117  [Eubacterium]...
WP_026509692  199 EVKEYEVSENAPEFy-GRWNNSr---TAKGRLEFAA-----QYDELVYDIGEaIPTeqIKNVTIKVKDqGGKMALKLYDg 269  Butyrivibrio ...
WP_081671307  104 EPEIEEADKNDLVFh-DRWNSSv---TSSGKLTFTK-----QYQEFVYDLGNtFDSanVKGVTVKVSNqQNNVCIKFYDa 174  Butyrivibrio ...
WP_013279437   95 TSAEPAEEENSLVFf-NRWNQSa---KTSGKLVFSK-----QYEEYCYDLGEtVPVanVKALTVKVSKqDKNVAIKLYDa 165  Butyrivibrio ...
CCZ77689       40 TTKTFAANQLTKAFagGADGTScesgEEGWNVVLKHddaehKYPQAVWNLSEsFDLanVESVTFNVKSqEGVIALKLGMt 119  Roseburia sp....
WP_012199538   37 KTYDFNSMTYQSTW--GVTYSIs---NGSGTFNFTG-----QYREIKFNLPEtLDMsqCTSVTFNASSpNGQIAFKLYDt 106  Lachnoclostri...
WP_051233726  300 KHIIYTKDDMEFMDt-WSKEAY----DGGNVLKFEK-----DWQEYCFKLKEpLNAerINSIKIKVKDqDATVAFKLYDe 369  Butyrivibrio ...
WP_022777372   82 PGGENEEVKDTLEFv-NRWVSSd---KCGNKITFQS-----QYQEYLYTFPKsFAAadCEEIVITVADqENNIALKIYDd 152  Butyrivibrio ...
AFU34339       38 KYYNFNNLTYQSAW--GASYYVn---GGSAYISFEG-----QYREIKFRLPEtLDMsqCTNVTFNASSpNGQIAFKLYDt 107  bacterium enr...
Feature 1               #       #                        # #                   
6SGF_A         76 g----dDATAANTQYGLSGqTEYTINPSGd-GAIDAVGIMITEdkpENATVSLVSVTFELK 131  Roseburia intestinalis L1-82
CUN06914      111 g----dDAEAANTQYGLTGsEEYTIEPSGe-GSVDAVGLMTTDetgSGSEVSLISVTFELK 166  Roseburia faecis
CRL34489      118 g---deDADGANTKYELTGaDEYSISPTGe-GDMVAVGLMTTDnagSGSAISLVSVTVETD 174  [Eubacterium] rectale
WP_026509692  270 ------DMNEKLADYNATGkDEYVISPNYd-GSVRYIGIMAMEpndTDDSYKTPYGITVNE 323  Butyrivibrio sp. LC3010
WP_081671307  175 ------DMTEKQANYGCNGnNEYTMVPTYd-GTVRYIGVMSMPsgeENYPYGITIDDVVVE 228  Butyrivibrio sp. XBB1001
WP_013279437  166 ------DMTEKYANYGCDKnCEYVFNPTYd-GNVRYIGVMSMAsgeAEYPYGITIDEVVVD 219  Butyrivibrio proteoclasticus
CCZ77689      120 na--sgWYDDVEACYGQNGqKQYTIVPEKteGTFDKVVIMTTQ---NDASFCLTSVVVTLK 175  Roseburia sp. CAG:18
WP_012199538  107 s----gNQVAVVYNFNSNT-SDCTFAPNSt-AKVNSIGIMAQGtnnYSAVVNRVTFTMTGG 161  Lachnoclostridium phytofermentans
WP_051233726  370 tqgedgKYKELLAEYGKKGqKEYVLNPSVd-GKVTHFAIMAMNsntYPCGVTIESVEFEYD 429  Butyrivibrio sp. NC3005
WP_022777372  153 ------SMAEHVAGYTFVGsDEYSITPNFd-GEVTAIGIMSMPgneADYPYSITIKDIKAT 206  Butyrivibrio sp. AE3009
AFU34339      108 a----gNQAAVKYNFNSST-SDVSFAPNTs-AKVNSIGIMAQGthwYSAVVNSVRFTMNDG 162  bacterium enrichment culture clo...

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