6NYB,1FAQ


Conserved Protein Domain Family
C1_Raf

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cd20811: C1_Raf 
protein kinase C conserved region 1 (C1 domain) found in the Raf (Rapidly Accelerated Fibrosarcoma) kinase family
Raf kinases are serine/threonine kinases (STKs) that catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. They act as mitogen-activated protein kinase kinase kinases (MAP3Ks, MKKKs, MAPKKKs), which phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. They function in the linear Ras-Raf-MEK-ERK pathway that regulates many cellular processes including cycle regulation, proliferation, differentiation, survival, and apoptosis. Aberrant expression or activation of components in this pathway are associated with tumor initiation, progression, and metastasis. Raf proteins contain a Ras binding domain, a zinc finger cysteine-rich domain (C1), and a catalytic kinase domain. Vertebrates have three Raf isoforms (A-, B-, and C-Raf) with different expression profiles, modes of regulation, and abilities to function in the ERK cascade, depending on cellular context and stimuli. They have essential and non-overlapping roles during embryo- and organogenesis. Knockout of each isoform results in a lethal phenotype or abnormality in most mouse strains. This model describes the C1 domain. The C1 domain is a cysteine-rich zinc binding domain that does not bind DNA nor possess structural similarity to conventional zinc finger domains; it contains two separate Zn(2+)-binding sites.
Statistics
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PSSM-Id: 410361
Aligned: 36 rows
Threshold Bit Score: 73.0987
Created: 4-Oct-2019
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
Zn binding site
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:H C C C C H C CClick to see conserved feature residue pattern help
Evidence:
  • Comment:Two non-consecutive sets of zinc-binding residues form two separate metal-binding sites.
  • Structure:1FAQ; Homo sapiens RAF-1 binds two Zn2+ ions.
  • Citation:PMID 8710867

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           #             #  #          #  #    #  #        # 
6NYB_A        260 TTHNFVRKTFFt-lAFCDFCRKLLF-QGFRCQTCGYKFHQRCSTEVPl-mCV 308  human
1FAQ_A          2 TTHNFARKTFLk-lAFCDICQKFLL-NGFRCQTCGYKFHEHCSTKVPt-mCV 50   human
XP_024499201  112 IRHNFERKTFFt-vPYCDHCHKLILlNGFRCTLCNFQFHQKCSYNVPe-yCD 161  Strongyloides ratti
PAA92513      380 SYHTFQRKTFFttiVYCCKCSKILF-SGFRCQTCQVRYHQRCCDSVLympCP 430  Macrostomum lignano
PAA78839      165 STHNLQHKTFFt-iVYCSKCSRLLI-RGYHCLTCQARFHQRCCDVGAv--CS 212  Macrostomum lignano
BAV14137      204 TYHQLQRKTFFe-kQYCDICHKFVF-IGVSCKICWGAYHVRCVGKSK---CV 250  Dugesia japonica
XP_011648087  453 AYHNFVRNTFLl--SYCCICKKRLF-YGFHCTTCNRKIHKKCRAYAPa-lCE 500  red harvester ant
XP_011695439  262 LPHEFVYNTFLl--GQCSACRNAIL-YGIICRACNRKYHTRCMNFASl-lCE 309  little fire ant
KYM89269      289 WTHNFAGTKVLl--GYCYVCGKSVL-YGFICKACNRKFHTKCVSYASl-lCE 336  Atta colombica
CCD78920      266 LEHHFQRKTFFe-kAYCNLCHKSIF-HGAICKACGCAYHNRCLPRVDk-nCL 314  Schistosoma mansoni

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