6HIH


Conserved Protein Domain Family
cyt_c'_beta

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cd20752: cyt_c'_beta 
Cytochrome c'-beta from Methylococcus capsulatus (Bath) and similar proteins
Cytochromes (cyt) c' are defined by a pentacoordinate heme Fe with a CXXCH c-heme-binding motif located close to the C-terminus. Most cyt c' have four alpha-helix bundle structures, and are referred to as cyt c'-alpha. M. capsulatus (Bath) cytochrome c'-beta, encoded by the cytS gene, is a homodimeric heme protein with a higher molecular weight of about 16 kDa per monomer, compared to cyt c'-alpha (~12 kDa), and it adopts a beta-sheet structure. It is involved in nitric oxide scavenging and protection against nitrosoative stress. Cyt c'-beta belongs to a family, called the cytochrome P460 family, of small mono-heme c-type cytochromes that are predominantly of beta-sheet structure, as opposed to the four elongate, tightly-packed alpha-helices of the widely distributed cytochromes c' of photoheterotrophic and denitrifying bacteria.
Statistics
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PSSM-Id: 410959
Aligned: 112 rows
Threshold Bit Score: 130.386
Created: 19-Sep-2019
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
heme bindinghomodimer
Conserved site includes 19 residues -Click on image for an interactive view with Cn3D
Feature 1:heme binding site [chemical binding site]
Evidence:
  • Structure:6HIH: Methylococcus capsulatus str. Bath cytochrome c'-beta binds heme C; contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                         #                # #                        # #                
6HIH_A        23 TKVKYPDGFRSWYHVKSMVIQp-gHPLENpfggIHHVYANAEAIQGLrg----gnYPDGAVLVFDLFDy-QEDNh-ALVE 95  Methylococcus c...
Q1IK54        28 EGVPFPNGFRNWFLVNSMIVTk-dSPIADqlggMHIIYVNAKGLPTLkkss-plpYPDGTVFADDVHEf-LLKDg-AYVE 103 Candidatus Kori...
OGP80289      26 KGAMLPKDWMTYQFIGSLIITdqkSPLFG----IHHFYMNKKGIETFkkg---gaYPDGTIIVDAVYEa-VMGQggMINE 97  Deltaproteobact...
OIP35475      31 KTAALPKDFRAWTHTKSMVIPdksHGLYG----FHNIYANKAALPSLkkg---gtFKEGSVMVGSFYDv-VVESg-MTTQ 101 Deltaproteobact...
WP_101522469  25 EPLSLPAELDTFRHINTLVVPaadSPIQG----VHHFYMNRKGLETFnkdasrksYPDGTKILGKVYKp-IETAdgRIKE 99  Chromatocurvus ...
RJQ31238      48 HEPDFLIGYSDWANTFSKVVSnskSPFYG----FLRVLVNDTALPAYktg---saYLQGSVLVLEFNGmeEVSDs-AGSE 119 Candidatus Parc...
WP_132315881  23 KKAKLPKNFRFWTHTKSMVIPdksHGLYG----FHNIYANKKAYKTMirs--kkpYPNGAKFVVSFYDv-VKKDg-TTNQ 94  Pseudobacteriov...
TMK20294      68 DVKPPPAGYRHWFHVNTMIIDk-aSPLFKdlggMHNVYVNSVGEAALkkg---gpYPDKSMFVTDLHDf-TVSDg-SYVE 141 Alphaproteobact...
WP_141734465  24 EFAVLPKGFRMWTHTKSMVIPdksHGLYG----FHNIYANKKALTTLkag--ngpYPDGSAFVVSFYEv-KNEGg-ASTQ 95  Oligoflexus tun...
TVM00452     126 GSFAFPVDLRSWRHSNSKIILdknSPLYG----LQQIYVNDTGFEANksg---giYPDGSIITVGFYEp-IVDGk-TITQ 196 Candidatus Broc...
Feature 1                 ###                ###                   ##  ##        ####   
6HIH_A        96 Gk---RKLIGVMERDakrf--satGGWGYEGFGegkpd---krlvTDGGQGCFGCHAAQk-eSQYVFSRLR 157 Methylococcus capsulatus...
Q1IK54       104 Ar---KKVVAVMVKDakky--satGGWGFQVWTagdpskplvpdtAHAAKACFTCHTPQk-aQDYTFSTYI 168 Candidatus Koribacter ve...
OGP80289      98 Gk---KLFYPVMIKDskgkeaketGGWIFAAFDpdgk-----piqMDVKKGCFECHASVk-dSDYVFSKPL 159 Deltaproteobacteria bact...
OIP35475     102 Gk---KLMDVYMKKDksa---vktGGWVYAAFGpdrk-----akaIDPVKDCFDCHAAGakdTDYVFHKYI 161 Deltaproteobacteria bact...
WP_101522469 100 Gq---LAAFTYMVKDpespatkdtGGWHFLKYDakgk-----pveINPVKDCFGCHRPHe-aSDFVMSRPL 161 Chromatocurvus sp. F02
RJQ31238     120 ItmdkTIWLAVMVRDssa---vetGGWRFMALDgvtfr---ekpeVDPVTGCYNCHLPQr-tNDYVFSRYS 183 Candidatus Parcubacteria...
WP_132315881  95 Gk---KLMDALMVKDssa---kdtGGWIFAAFDdkga-----pkpINPKKDCFQCHADQaknNDYVFHKYI 154 Pseudobacteriovorax anti...
TMK20294     142 Ga---RKGLAVMVKDskky--astGGWGFQFWEggdpk---kpqvTDAAKQCFACHQPKk-dQDYVYSSYI 203 Alphaproteobacteria bact...
WP_141734465  96 Ga---KIMDAVMVKTpka---satGGWAYGVYDakgk-----rkaVDVVKGCYECHNAQakaTDYIFEKYI 155 Oligoflexus tunisiensis
TVM00452     197 Gn---IIWYASMKKDstaa--pqtGGWIMDGFDgkel----nsvvNDPVSGCFNCHMTQk-sNDYVFSKYI 257 Candidatus Brocadia sp. ...

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