Conserved Protein Domain Family
cyt_c_I

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cd20750: cyt_c_I 
Uncharacterized subfamily of the cytochrome P460 family
This subfamily is composed mainly of hypothetical proteins, including Sphingopyxis alaskensis class I cytochrome C. Members of this subfamily belong to the cytochrome P460 family that is composed mostly of monoheme, ~17 kDa, c-cytochromes typified by the cytochromes P460 of Nitrosomonas europaea and Methylococcus capsulatus (Bath), and the cytochrome c'-beta of M. capsulatus. Cytochrome P460 family members can be characterized by a predominantly beta-sheet structure as opposed to the four elongate, tightly-packed alpha-helices of the widely distributed cytochromes c' of photoheterotrophic and denitrifying bacteria. They are involved in the oxidation/reduction or ligation of N-oxides for detoxification or energy generation. The protein-bound c-type heme cofactor, heme P460, named for its characteristic ferrous Soret peak maximum at 460 nm, has the distinction of being the only known heme in biology to withdraw electrons from an iron coordinated substrate.
Statistics
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PSSM-Id: 410957
Aligned: 99 rows
Threshold Bit Score: 191.976
Created: 19-Sep-2019
Updated: 25-Oct-2021
Structure
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Aligned Rows:
 
heme bindingputative
Feature 1:heme binding site [chemical binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                               # #                     # #              
Q1GWW7        50 GTISFPADFPEs-YMFIGTWSVTAPSGEAe--------IHSVYSRPADVDAFrsagkFPDGAVLIKEVTIaks-adlVTG 119 Sphingopyxis al...
QDV91737      55 GSIRLPKDYRS--WTHLGTWYVAEGKNGEi-------nSHQVYAEPEAVAEFretqrFPHGATIVKEVRStks-gklTTG 124 Phycisphaerae b...
WP_137808107  42 GTITVPEDYRTk-FTFLGTFSVAGGDQAGgp-----aeFHQVYIDPDSIEQYrrtkaFPDGAILVKELQKart-ldmTTG 114 Pseudomonas sp....
WP_138161309  35 GDIHLPQVEFLrtWPVLGSWTILDGEEAGg--------FHTVYTQPGVIEAYletgsFPDGAVIVKELRSaat-gsyTTG 105 Pelagicola sp. ...
WP_081743902  52 GNIKVPKDYRTs-FIFLGSFAVPGGDSLGgl-----kqLHQVYIDRDSIEYYkshgeFPDGAMLIKELQGata-adlTTG 124 Pseudomonas sp....
PCI62266      11 GSIHMPKADFRrdWPVLGTWALTGDDGKVt-------gQHVVYSQRSTIDAFratgeFPDGAVLIKELLLaqs-aslTTG 82  Kordiimonadales...
CUK20052      11 GNIHMPRGEFRtsWPMLGSWTILDEGEATg--------QHVVYTQPGVIEYYlergsFPDGAVLIKELLEskt-deyTTG 81  Ruegeria denitr...
WP_127750920  17 GSIHMPDRNFRssWPSLGAWTILDDGEAAg--------QHVVYTQPGVIEHYlehgaFPDGAVLVKELLEtet-gnyTTG 87  Sedimentitalea ...
RFC32630      39 GSISVPKDYYL--WPTLGTWSHTKAEGGVani----heYHVVYTQPETIEYYkknrqFPDGAVLVKELLNaetmtmtTGP 112 Candidatus Nitr...
OQW66016      41 GALHVPENYTE--WPTLGTWAHANTGESLekmgpglheYHTVYTQPETIAYYkktgrFPDGAVLVKELLTaktmamtTGP 118 Nitrospira sp. ...
Feature 1                   ###                   ###                 ##  ##                #### 
Q1GWW7       120 RASWAGDRKIWFLMVKDRKGRFagnplWGDGWGWAQFDptdtKKQTATNy-QTDCKSCHIPAKs---------sEWVYTY 189 Sphingopyxis al...
QDV91737     125 PGTWDGPVQLWFVMVKDTKRTFpgnpiWGRGWGWGLYLaddpQKNTCTDy-KIDCLGCHIPAEk---------tDWVFQY 194 Phycisphaerae b...
WP_137808107 115 RSSSWKEDAGWFVMIKDTQGRFndsglWGDGWGWALFDaanrAKPTTTNy-KAECIGCHIPVKk---------tDWVHVW 184 Pseudomonas sp....
WP_138161309 106 TAAHASELEGWFVMVKDTQGRFtgnpaWGDGWGWGQFQagdtLTSIAPDy-QESCLGCHVPAQd---------sDWIYTQ 175 Pelagicola sp. ...
WP_081743902 125 HASFWDKNDGWFVMIKDTKGRYqnsgiWTNGWGWALIAq--dAPTITTNkdTSTCISCHTPVKk---------tDWVHVW 193 Pseudomonas sp....
PCI62266      83 EAAWATEISGWFVMIKDRKNRFpknqlWGKGWGWAYFGaedkTTSPTKSf-RAECMGCHVPAKk---------eDWIYSY 152 Kordiimonadales...
CUK20052      82 TAAYATETTGWFVMVKDEHDRFdgndlWGDGWGWAYFDvedrETTTTEDy-KFECKTCHVPARe---------tDWIYTE 151 Ruegeria denitr...
WP_127750920  88 TAAYAAETTGWFVMVKDNHDRFegndlWGTGWGWAYFGaddrDLTTTENy-RSECKSCHIPARk---------tDWIYVE 157 Sedimentitalea ...
RFC32630     113 AVGHGTTLKGFFVLVRDTQGRFkgsplWGDGWGWSFFNpddlVKTVSKDy-KIDCVPCHKPALdlaprnakkddKWIYTL 191 Candidatus Nitr...
OQW66016     119 AVGHATTIKGWFVLVRDTKGRYresslWGDGWAWSLFNaedpNHTVSKNy-KTDCIPCHVPARelarsnapdadKWIYAF 197 Nitrospira sp. ...
Feature 1             
Q1GWW7       190 AYPAL 194 Sphingopyxis alaskensis
QDV91737     195 GYPAL 199 Phycisphaerae bacterium RAS2
WP_137808107 185 AYPLL 189 Pseudomonas sp. G(2018)
WP_138161309 176 AYPVL 180 Pelagicola sp. DSW4-44
WP_081743902 194 GYPLL 198 Pseudomonas sp. URMO17WK12:I12
PCI62266     153 AYPVL 157 Kordiimonadales bacterium
CUK20052     152 AYPVL 156 Ruegeria denitrificans
WP_127750920 158 AYPVL 162 Sedimentitalea sp. W43
RFC32630     192 GYPVL 196 Candidatus Nitrotoga sp. MKT
OQW66016     198 GYPVL 202 Nitrospira sp. ST-bin5

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