2JE2,6HIH,6HIU


Conserved Protein Domain Family
cyt_P460_fam

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cd20716: cyt_P460_fam 
Cytochrome P460 family
The cytochrome P460 family is composed mostly of monoheme, ~17 kDa, c-cytochromes typified by the cytochromes P460 of Nitrosomonas europaea and Methylococcus capsulatus (Bath), and the cytochrome c'-beta of M. capsulatus. Members of this family can be characterized by a predominantly beta-sheet structure as opposed to the four elongate, tightly-packed alpha-helices of the widely distributed cytochromes c' of photoheterotrophic and denitrifying bacteria. They are involved in the oxidation/reduction or ligation of N-oxides for detoxification or energy generation. Phylogenetic studies suggest that cytochrome P460 (cytL) genes evolved from ancestral cytochrome c'-beta genes (cytS) by acquisition of features including the lysine-heme cross-link. The protein-bound c-type heme cofactor, heme P460, named for its characteristic ferrous Soret peak maximum at 460 nm, has the distinction of being the only known heme in biology to withdraw electrons from an iron coordinated substrate.
Statistics
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PSSM-Id: 410956
Aligned: 360 rows
Threshold Bit Score: 60.4489
Created: 14-Apr-2017
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
heme bindinghomodimer
Conserved site includes 19 residues -Click on image for an interactive view with Cn3D
Feature 1:heme binding site [chemical binding site]
Evidence:
  • Structure:2JE2: Nitrosomonas europaea Cytochrome P460 binds heme C; contacts at 4A
    View structure with Cn3D
  • Structure:6HIH: Methylococcus capsulatus str. Bath cytochrome c'-beta binds heme C; contacts at 4A
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                         #                     # #                       # #            
2JE2_A        11 GELLLPKNYreWVMVGTQVTPnelndg-----kapfteIRTVYVDPESYAHWkktg--efrdGTVTVKELVSvgdrkgpg 83  Nitrosomonas eu...
RZN83329      43 IAFKDFSDYrnWYQITHEKPNtgdiigvlgsnhkgpkgYREVYINKIGEATNkgtapysypaGTVIVKEQYSskekw--- 119 Winogradskyella...
PIQ16385      37 DLNPLWKDYksWYKVTHESPNtgdptgfldgkhsgtkaYREIYINKKGEGIQkmagnnkypaGTVVVKEAYKnkeaw--- 113 Flavobacteriale...
ASJ74695      31 DADPRWADYksWTKVTELEPStgnptrflggvhmgdegYRDVYVNDIAKEALlgsapynlpeGSVIVKEQFAdqadwe-- 108 Granulosicoccus...
PKP51660      37 ELNPLWKDYksWFRVTHEAPNtgdptgfldgkhsgtkaFREIYINKKGEATQkmagnnkypaGTVVVKEAYKskaaw--- 113 Bacteroidetes b...
OIO09617      36 NLGNPWDGYksWYKITKDAANtgdptgflsnkhsgskaFREIYINSVGEGTQqghapykyaeGTILVKETFKdkaay--- 112 Flavobacteriace...
PKP28969      40 ALANPWDGYtsWYKITKDAPNtgdptgfiekrhngkaaYREIYMNEIGAAVNkgsgpykypeGTIVVKETYKnkatw--- 116 Bacteroidetes b...
WP_088918715  30 KPDPRWADYksWTKITEGEPStgnsqalg-gvhmgiegYRDVYVNEIGLEMLtgdgpydfpeGTVVVKEQFAnkadwe-- 106 Granulosicoccus...
PJB12969      39 DLDPLWDGYrdWFHVTKDKPNtgdptgflsgkhkgtkaFREIYINKSGEAVHkqagnpkypaGTVIVKESYGskakw--- 115 Flavobacteriale...
WP_028469143  31 NTDSRWANFknWTKITENRTStgdptgfvstvhkgrdgYRDVYVNDIGLAVIqgtapynypeGTVIVKEQFDdlaaf--- 107 Neptunomonas ja...
Feature 1                     ###               ###                  ##  ##          ####  
2JE2_A        84 sgngyfmgdYIGLEASVKDsqrfanepGNWAFYIFYvpdtplvaaaknlpTAECAACHKEna---ktDMVFTQF 154 Nitrosomonas europaea
RZN83329     120 -----eektDFKVTVMVKLdagsspetGDWGYTSKIkdgkif--sgnsskARFCGGCHIVaq---dtDYVFMNS 183 Winogradskyella sp.
PIQ16385     114 -----eakkKPVLTVMVKLdagkspdtSDWEYYMGSskknl-----fmnfQSFCSKCHVYaq---akDFVFMNA 174 Flavobacteriales bact...
ASJ74695     109 ----anrkaAHTISVKVAKtde--lskDNWIWADSYkgd--------ageSAFCSGCHSIaa---ktDFVFTHG 165 Granulosicoccus antar...
PKP51660     114 -----eakkSPVLTVMVKLengkapdtSDWEYYMGSakknl-----fmnfQKFCSGCHVYaq---tkDFVFMNA 174 Bacteroidetes bacteri...
OIO09617     113 -----dkgdKFILTVMIKQkegsspetGDWGFVMGAggaist---gtskwAKFCSNCHVYaa---snDYVFMNA 175 Flavobacteriaceae bac...
PKP28969     117 -----ekkgSNVLTIMIKQaegtspetGDWGYVMGAdgklst---gtskwAKFCSGCHVYaa---gkDYVFMNA 179 Bacteroidetes bacteri...
WP_088918715 107 ----tgkraAHTISLKVADnpg--tsaADWNWAAGYtgkvk-----ahiaDPNCVACHTAavalnksDYVFSVP 169 Granulosicoccus antar...
PJB12969     116 -----eaksGPQLTIMVKLkegespetSDWGYVMGAkgkvst---gtskwAKFCNKCHIYga---anDNTFMTS 178 Flavobacteriales bact...
WP_028469143 108 -----kaqkPTDLTIMVKLrngatpdaKNWGWVAGYnakl-------eetNAFCSGCHSIat---qnDFVFTNE 166 Neptunomonas japonica

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