6H3Z


Conserved Protein Domain Family
NOT1_connector

?
cd20710: NOT1_connector 
Connector domain of NOT1
This NOT1 connector domain is one of several catalytically inactive subunits of the multisubunit CCR4-NOT complex assembly that plays a central role in post-translational gene regulation in eukaryotes. CCR4-NOT contains the catalytic center formed by two deadenylase subunits CCR4 and CAF1, and the conserved core complex which contains a minimum of four catalytically inactive subunits, NOT1, NOT2, NOT3 and CAF40/NOT9. NOT1 is the largest subunit which functions as a central scaffold for complex assembly in human orthologs. The Chaetomium thermophilum NOT1 connector domain consists of five alpha-helical hairpin repeats of the HEAT type that structurally resemble MIF4G domains, and hence is also called the MIF4G-C domain. However, NOT1 MIF4G-C does not interact with DEAD-box helicases such as DDX6 like MIF4G does. Structural conservation of this domain suggests an important role but its function is as yet unknown.
Links
?
Statistics
?
PSSM-Id: 411008
Aligned: 286 rows
Threshold Bit Score: 72.2919
Created: 17-Aug-2020
Updated: 25-Oct-2021
Structure
?
Program:
Drawing:
Aligned Rows:
 
Conserved site includes 38 residues -Click on image for an interactive view with Cn3D
Feature 1:HEAT repeat [structural motif]
Evidence:
  • Comment:alpha-helical hairpin repeats that structurally resemble MIF4G domains characterized by a common architecture consisting of five stacked helical hairpin repeats of the HEAT type

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1          ######################                        ################                 
6H3Z_A         22 QIDSRAVAERINKYLEQLTAAATsateehf----------nelprphAVLDIIDALIQLIIKAqqt-------------- 77   Chaetomium th...
ODV85108     1224 RAALDQSFIYIQQLMEALLKSIAetkqneih--------lreismdhPSRNYLAEIIQVLSRMgn--------------- 1280 [Candida] ara...
OWB75874     1680 AITLEQSFAYLRQVLDGLLKTVNeypnahl----------rditvghPLRNYLAETLQICSRInl--------------- 1734 [Candida] boi...
XP_013936200 1513 EQPQRTLEQSFIYIQQLLEAVVKsieetpekei-----hlreisidhPLRSYLTELIQLLSRLnh--------------- 1572 Ogataea parap...
GAV26718     1258 QVPGTILEQSMNFINQHLETIIKtinsidnkni----rlsdnvpetePIKTLLVEVIQALTRLgq--------------- 1318 Pichia membra...
KGK36356     1537 QLPPNVLEQSIAFINQHFETIIKatqelsdkdl----klssdtseiePIKNMLMEIVQTLTRLsq--------------- 1597 Pichia kudria...
TID17203     1516 QIPQNVLEQSFAFFNIHLESAIKiaeatenkel----lltaaspetdAIKTHVGEIIQGLTRLgq--------------- 1576 [Candida] inc...
VEU21972     1247 ALLRDTSIPKKFEKGSETEEAIEpegadegkeekkvpqtlkelpadsPIKVYLTQTLQVLARVnh--------------- 1311 Brettanomyces...
XP_020047211 2231 IDSQNTVNERLITLNSNIDSLIN------------------------SVKNLDVSFIDLVSNNvftlkinailftcgsfk 2286 Ascoidea rube...
VAX54864     1145 ILALQQLLDNVQQSALVVQKELPeakslqd-----------ipsnsmPKVLALQALGLLTRIDn---------------- 1197 Brettanomyces...
Feature 1                                                                                         
6H3Z_A         78 ---seEFAIYALQQISQLLFrqp--egTLLLESLVHVLETIRKIaGPQVSEQVRQLFHQQPGHlfLSLSLIAALLgtdLL 152  Chaetomium th...
ODV85108     1281 ----qDTYMKFAHLAMNALFrte-tpsQLLIEALVFLLDKTCEM-SPYAAKFVTTWLITADDErkYNKKIMSSLVmvgMV 1354 [Candida] ara...
OWB75874     1735 ----nDLYMKLAQLVMNTLFgst--nnQLLVETLIFLLDKICEM-SPSVAKSITTWLVTADDErkYNENIISSLIligMI 1807 [Candida] boi...
XP_013936200 1573 ----nELQMKIAQVVMNTLFsaq-nasQLFVEAFIFLLDKSCEL-SSYVAKFVTTWLINAEDPrkFNRKVMASLVqigMV 1646 Ogataea parap...
GAV26718     1319 ----qELYMKYAQIALNTLFgvv-gpsQLLIDSFVFLLGNICDV-SSFVVRFITAWLFNSDDErkLDVKVLTTFVlegFI 1392 Pichia membra...
KGK36356     1598 ----qKLYLEYAQMSINTLFsvk-epsQLFVDVFVFLIGSICDS-SPFVVRFISTWLFHSADErkLNPKILKTFIlegFI 1671 Pichia kudria...
TID17203     1577 ----pELFIKYAQICANYLFglk-dtsPLLIDTLVFLLTAICDA-SSIAARSILTWLFNADDErkNNIEILRRLIaegFM 1650 [Candida] inc...
VEU21972     1312 ----aEVYMKCAQMAMNALFggd--psGLTIEAFIFLLDKVCEM-SSVVAKFVSGWLINADDErkYSKSVLEALVragMV 1384 Brettanomyces...
XP_020047211 2287 hlfknQFPTKVAQHVVSKILenp--edSLFTETLFFILDKICEA-FPITGRDVTWWIVNSDDSrkYNIKLMKKFLnmgLI 2363 Ascoidea rube...
VAX54864     1198 ----vDLCLKFAQMVMDILFnkertstHLVTECFVFLLDEVCGL-SSIVARFVTGWLVNAEDErkYNKNVLEALIragMA 1272 Brettanomyces...
Feature 1                                                                                         
6H3Z_A        153 DWKNIDMAMAKALEQrk--------------------------egSIDFLEQLMDLVLLNDtpla---lftDFVRSLEAA 203  Chaetomium th...
ODV85108     1355 SLNDLDLSISKSIEAkkd-------------------------ekVIDFACSLILDMILSEqpia---lraDFINVVSVL 1406 [Candida] ara...
OWB75874     1808 PINELDISLAKVIKEkkd-------------------------pkVVTFASDLILHLVISEtafa---lrsDFILTINAI 1859 [Candida] boi...
XP_013936200 1647 SLGDLDLSISKTLVNkkd-------------------------eaVLNFASGLVLDMVFGAtpta---lrsDFTNIINAV 1698 Ogataea parap...
GAV26718     1393 SLNDLSYSLCKRIEAtkd-------------------------qkVISFACDLIEELVFGEqpia---lrsDFVRVIELL 1444 Pichia membra...
KGK36356     1672 SLSDISYAICKHIEVtkd-------------------------skWISAACDIISDFVFGAepia---lrsDFIQIISLL 1723 Pichia kudria...
TID17203     1651 SVDDISFSLSKRLQLtkn-------------------------enLINFTCQLIDDFIFGAspiamradfsELILLLSED 1705 [Candida] inc...
VEU21972     1385 SLADLDAMLARGVRKeiknvgksdr----------ddasgsnptsAVDFASDLIADLVLHKpva----lrsDFVNTLTAL 1450 Brettanomyces...
XP_020047211 2364 SASDLDGPLSKSILAkd--------------------------efLINFACNLIDEIVLGAkpis---lrsDFATCINAL 2414 Ascoidea rube...
VAX54864     1273 SLTDLDYMLAKGIKGqseensknnnvkkekepsmksdenespdvlATEFALDIIKELVVDKpia----lrsDFLKTLKAF 1348 Brettanomyces...
Feature 1                               
6H3Z_A        204 WAWIVEdpd-lpaAQRFKAKVR 224  Chaetomium thermophilum var. thermophilum DSM 1495
ODV85108     1407 KTLSPEeqdanpkVKEVFDLLD 1428 [Candida] arabinofermentans NRRL YB-2248
OWB75874     1860 RDLNLEdn---esSKKLIKKLE 1878 [Candida] boidinii
XP_013936200 1699 KSLDKDdleksvlAQELIKHLD 1720 Ogataea parapolymorpha DL-1
GAV26718     1445 GSADETiqs-mskVKELFEKLA 1465 Pichia membranifaciens
KGK36356     1724 ERSDDTikn-sekVQSLFKKLE 1744 Pichia kudriavzevii
TID17203     1706 EFFHSYe-----sVTKLFDKLE 1722 [Candida] inconspicua
VEU21972     1451 AESKSEr------ALSLLNSSS 1466 Brettanomyces naardenensis
XP_020047211 2415 STISNNstfsnekARLLLEKFK 2436 Ascoidea rubescens DSM 1968
VAX54864     1349 DDIDDRr------LVTALNSSK 1364 Brettanomyces bruxellensis

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap