6CP9


Conserved Protein Domain Family
CdiI_Kp-like

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cd20698: CdiI_Kp-like 
inhibitor (or immunity protein) of the contact-dependent growth inhibition (CDI) system of Klebsiella pneumoniae, and similar proteins
CDI toxins are expressed by gram-negative bacteria as part of a mechanism to inhibit the growth of neighboring cells. This model represents the inhibitor (CdiI, also called CdiI immunity protein) of the CdiA effector protein from Klebsiella pneumoniae, and similar proteins. CdiA secretion is dependent on the outer membrane protein CdiB. Upon binding to a receptor on the surface of target bacteria, the CDI toxin is delivered via its C-terminal domain (CdiA-CT). The CdiI immunity proteins are intracellular proteins that inactivate the toxin/effector protein to prevent auto-inhibition. They are specific for their cognate CdiA-CT and do not protect cells from the toxins of other CDI+ bacteria. Thus, CDI systems encode a complex network of toxin-immunity protein pairs that are deployed for intercellular competition. The K. pneumoniae CdiI binds its cognate CdiA-CT via one end of its beta-sandwich structure.
Links
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Statistics
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PSSM-Id: 412050
Aligned: 57 rows
Threshold Bit Score: 67.242
Created: 30-Sep-2020
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
heterodimer
Conserved site includes 12 residues -Click on image for an interactive view with Cn3D
Feature 1:heterodimer interface [polypeptide binding site]
Evidence:
  • Comment:CdiA protein binds neighboring bacteria and delivers C-terminal toxin domain (CdiA-CT) to inhibit target-cell growth; CdiI immunity protein specifically neutralizes cognate CdiA-CT toxin to prevent self-inhibition
  • Structure:6CP9: Klebsiella pneumoniae immunity protein CdiI binds CdiA toxin; contacts at 4.0A
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                         ####   ## #               #      # #             # #           
6CP9_B         5 NKPGEIELLSFFESEPVSFERd-nISFLYTAKNk--cGLSVDFSFSVVegWIQYTVRlhenEILHNSIDgv--sSFSIRN 79  Klebsiella pneu...
WP_140179998   5 ELPDEVDFLCFFETEPFLKDVsdnMTFGYEYHKn---NVSLLFYFTAFegFVTLEMKv--dNITNLVLHiryveKIQLSK 79  Providencia stu...
WP_143102732  12 SFPSETEMLAKFGIQPEVDEFf--GAFTYVFRCpqvsRCELLLTFSTLwrYIALTLShgdeQLFTIDMDrl--sALRLVS 87  Rhizobium sp. N...
RCW08604      19 IFPEQFEFLEKFGIEPTYFDPs-fVSFSYRKEDsi-sGLSIEISFSDVeeSFQVRLFrgegDVAVISSErv--kSISVFD 94  Ralstonia solan...
WP_137018913   6 ELPDEIDFLCFFENEPFLKDIqdnITFGYEYKKr---NVTLLFYFTALegRVTLMLKv---DDVNVMVQpi--rYVEIIR 77  Providencia ret...
WP_075944866   2 KFPSTNDFLEEFGIEPAEVDPs-lALCRYIKTSkn-sGLEVEISFSAVigSFQVVLRlamqEIAIISSEnv--kAIELVR 77  Pseudomonas rei...
WP_153066509   2 IFPRKIDFLTELGMEPIEIDSs-lGLSTYRKISsd-gKSEMKISFSAVmnSFQVSLRisekEVIKFSSEkv--aSIEIIK 77  Xanthomonas arb...
POZ50308      40 VFPSTDDFLQAFGLEPIESDRd-sAYCRYVKPSsd-gNTEIDFSFNAAarSFQAVLRcggnEIAAICSEkv--kFIEIRH 115 Methylovulum ps...
WP_092132199   2 KFPSELDFLQSFGIEPVEVDAs-mAYCRYVKTSnn-gASELDFSFSAVseSFQVVLRsagqEMVSVSSEna--sLIEIRS 77  Polaromonas sp....
WP_152427422   2 KYPAREEFLDRFGLEPFKVDPe-iGLFVYRAGSe--gQVEVEFSFSLVmrSFQALISidgvDVSVISSEgv--nSILIFE 76  Stenotrophomona...
Feature 1                                           
6CP9_B        80 DnlGDYIYAEIItkelINKIEIRIRPDIKIKSSSV 114 Klebsiella pneumoniae 342
WP_140179998  80 D--VMMIKREENs--gLPEVSVQIEPTILIKTHPV 110 Providencia stuartii
WP_143102732  88 EqkTSWLQASFDdeasLPDLIIQIEPTIQIRWSVT 122 Rhizobium sp. NFR07
RCW08604      95 DdsGKGVRVAFDfhglASEANICLEPRINVRWWTL 129 Ralstonia solanacearum
WP_137018913  78 Ld-KNTMIIKCNensgLPEISVQLEPTILIKNHIP 111 Providencia rettgeri
WP_075944866  78 DnsGAGVRVVFDicetTSEARVTLEPEVSCQWWTL 112 Pseudomonas reinekei
WP_153066509  78 NetASGLCVKFDfselNSEAFIRLEPDISCDWWSI 112 Xanthomonas arboricola
POZ50308     116 DktMSGLHVVFDidgvLSEALIALEPTLHCKWWLL 150 Methylovulum psychrotolerans
WP_092132199  78 TqrGSGIHVVFDtpggKSEAEVTLEPNLYCSWWYL 112 Polaromonas sp. YR568
WP_152427422  77 NngRSGLRIEFIpglgLSRAELVLEPTIHLSWSTL 111 Stenotrophomonas maltophilia

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