5T87


Conserved Protein Domain Family
CdiI_Ct-like

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cd20694: CdiI_Ct-like 
inhibitor (or immunity protein) of the contact-dependent growth inhibition (CDI) system of Cupriavidus taiwanensis CdiI immunity protein and similar proteins
CDI toxins are expressed by gram-negative bacteria as part of a mechanism to inhibit the growth of neighboring cells. This model represents the inhibitor (CdiI, also called CdiI immunity protein) of the CdiA effector protein from Cupriavidus taiwanensis, and similar proteins. CdiA secretion is dependent on the outer membrane protein CdiB. Upon binding to a receptor on the surface of target bacteria, the CDI toxin is delivered via its C-terminal domain (CdiA-CT). The CdiI immunity proteins are intracellular proteins that inactivate the toxin/effector protein to prevent auto-inhibition. They are specific for their cognate CdiA-CT and do not protect cells from the toxins of other CDI+ bacteria. Thus, CDI systems encode a complex network of toxin-immunity protein pairs that are deployed for intercellular competition. This C. taiwanensis CdiI is alpha-helical and binds its cognate toxin CdiA-CT domain with high affinity.
Statistics
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PSSM-Id: 412048
Aligned: 120 rows
Threshold Bit Score: 66.0362
Created: 30-Sep-2020
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
heterodimer
Conserved site includes 15 residues -Click on image for an interactive view with Cn3D
Feature 1:heterodimer interface [polypeptide binding site]
Evidence:
  • Comment:CdiA protein binds neighboring bacteria and delivers C-terminal toxin domain (CdiA-CT) to inhibit target-cell growth; CdiI immunity protein specifically neutralizes cognate CdiA-CT toxin to prevent self-inhibition
  • Structure:5T87: Cupriavidus taiwanensis CdiI immunity protein binds CdiA toxin; contacts at 4.0A
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                    ##  #   #   #                       #   #      #  #                 
5T87_A        16 IDHVLAsg---nPEAIADACLSIAYyedDWEWAFKRLKSVAfdlnrpdSLRSLAVTCVGHLARRihdldvaXAEEFLLSL 92  Cupriavidus tai...
WP_108372682  12 AENDILlns-snEDEKILALITLVHcsgNYNLAMQKSIEFAkne--seLIAANAIGCFGDIARIyrkldfeIVEEILNVY 88  Flavobacterium ...
PYP89956      20 IPSSLLsg---kVQQIHDALISAAYwdeDWRWAQQQLVNFAehd--dnVVLWAVILGLGFIAVFhgeideeTSLPILNRL 94  Blastocatellia ...
WP_025289394  19 MILTSSev---eDYIKHKVILSLGMytdEPSKTKDILFSFLsse--diELERVSLLSIGHMARVfrninrrELIEEIKNM 93  Bibersteinia tr...
PYE61803      23 AIQELKlg---dDKRVINALLGLALneqDWMWVQDICIQFSnhs--nyNVRGIAILCFGHLARIhgqleteKVLPIVKKA 97  Paenibacillus s...
WP_090923289 135 IINRMGsd---nPETIVNGLLSLALnadDGEFVQELMVPYTrhk--neNIRGIAILCFGHIARIhgavnkqLIIPLIHDA 209 Paenibacillus p...
WP_072878313  11 SPEKLSldeatsLEEKIIGLLGLVLygeDYNLAIEKSLEFSnsp--dnLIKGCAFICFGHLARLhgkldldRVIPVFKAN 88  Muricauda antar...
WP_106597608  13 TQNGLDsn---dPDVVLSALLSTVMkgsSYDLSVSTTSRFLshp--dkYIRGAAVECISHIARIwni-vpvDFLSHVNLA 86  Dyadobacter jia...
WP_063576455 137 IFKRINsg---dTENVINGFLELAVstdDPDFVQEILVMYSehe--daKIRGTAIFCLGHIAKVykkinkeLVLLIINQG 211 Bacillus sp. FJ...
SMQ77504     137 ACKLINsd---dTDEVVNGLLGLALnsdDLDFIQDIMTRYSehe--naKIRGTAILCFGHIAKIhekiskkLVLPIINQG 211 Bacillus sp. OV166
Feature 1                 #   #  ##  ##
5T87_A        93 ggd--qavASAASDALDDLRIF 112 Cupriavidus taiwanensis LMG 19424
WP_108372682  89 knsqsewiHSKILDSLDDILVF 110 Flavobacterium magnum
PYP89956      95 kgr--palTGEVEETWAEIDHF 114 Blastocatellia bacterium AA13
WP_025289394  94 khk--evlNGVIEDVLDDISIF 113 Bibersteinia trehalosi
PYE61803      98 lndtndfvRGQANSALDDIQFF 119 Paenibacillus sp. OV191
WP_090923289 210 lrdesslvRGHADSALDDINMF 231 Paenibacillus polysaccharolyticus
WP_072878313  89 qhtedsvlKGKMEDAISDIVFF 110 Muricauda antarctica
WP_106597608  87 lndsdgwvKGKAENAVDDLEVF 108 Dyadobacter jiangsuensis
WP_063576455 212 fqdessfvREQSRLALDDINFY 233 Bacillus sp. FJAT-20673
SMQ77504     212 lkdessfvREQSRSALDDINFY 233 Bacillus sp. OV166

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