4NTQ


Conserved Protein Domain Family
CdiA-CT_Ecl_RNase-like

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cd20685: CdiA-CT_Ecl_RNase-like 
C-terminal (CT) domain of the contact-dependent growth inhibition (CDI) system (CdiA-CT) protein CdiA of Enterobacter cloacae, and similar proteins
CDI toxins are expressed by gram-negative bacteria as part of a mechanism to inhibit the growth of neighboring cells. CdiA secretion is dependent on the outer membrane protein CdiB. Upon binding to a receptor on the surface of target bacteria, the CDI toxin is delivered via the C-terminal domain. A wide variety of C-terminal toxin domains appear to exist; this particular model contains the C-terminal (CT) domain of Enterobacter cloacae CdiA and similar domains. This CdiA-CT toxin has structural homology to the C-terminal nuclease domain of colicin E3, which cleaves 16S ribosomal RNA to disrupt protein synthesis, and has been shown to use the same nuclease activity to inhibit bacterial growth. The CdiA-CT toxin is specifically neutralized by cognate immunity protein CdiI to protect the toxin-producing cell from autoinhibition. Despite carrying equivalent toxin domains, the corresponding immunity proteins for CdiA-CT and colicin E3 are unrelated in sequence, structure, and toxin-binding site, thus showing diversity among 16S rRNase toxins.
Statistics
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PSSM-Id: 411003
Aligned: 96 rows
Threshold Bit Score: 58.0006
Created: 12-Apr-2017
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
heterodimer
Conserved site includes 21 residues -Click on image for an interactive view with Cn3D
Feature 1:heterodimer interface [polypeptide binding site]
Evidence:
  • Comment:CdiA protein binds neighboring bacteria and delivers C-terminal toxin domain (CdiA-CT) to inhibit target-cell growth; CdiI immunity protein specifically neutralizes cognate CdiA-CT toxin to prevent self-inhibition
  • Structure:4NTQ: Enterobacter cloacae C-terminal domain of CdiA toxin (CdiA-CT) binds CdiI immunity protein; contacts at 4.0A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                        ###      #### #            # #  ##              # ##          ###
4NTQ_A        163 KEAQEAASNlgFDRRIPPqkapfnSHGQPVFYDg------kNYITPDIDs------HNVtNGWKXFNs--------kGKR 222  Enterobacter ...
WP_137864230  699 TDASRDARArgWTDTGQIs-----KGGAKIWHDpk----sgMYYTRDRPaqatgttHNG-GAWKGAYtpdg--lnskETR 766  Sphingomonas
WP_130799228   12 HQSDDVAKFlgYTKTKQIs-----VLKAPIWHNkkg---npKYITWDRTg-----rHPQ-PVFKGSNekgafqttksSGR 77   Streptomyces ...
ACU77451     1400 SQADDVAKYlgYKKTKEMs-----AGKQPIWVNkkagggqpKYITYDRTg------HSG-GIFKGASfekpfqttkdTGR 1467 Catenulispora...
WP_082403179 3148 DQSDEVAAWlgYTVRREKs-----AGGPKIWHNkkap-aaeRYIAQDTAg------HGG-GLFKAGPtveslqttssKYR 3214 Saccharothrix...
AXX31226     2163 NQADDISTFlgYTRLKGQgn--vsAGKSMIWQNkkarsgqpEYIARSRTa------HGD-EVFKGGDsveslqrtskSLR 2233 Actinosynnema...
WP_086678691 2178 EQADQVAGAlgYRPTKFRs-----AGNAKVWMNkkap-aseRYITWDRTg------HKR-GIFKGGSapdafssttsAGR 2244 Amycolatopsis...
WP_019065796 2259 GQADDLAKWmgYAKTGQKs-----AGGSMIWRAgkga-sgpAFIAEDMTg------HLG-GIFKGAKkasdllssgkVLR 2325 Streptomyces ...
WP_109977571 1412 AQSNQVLEYlgYKETKEKsa---gRGAARIWVNkkap-aaeRYVTQDMTg------HGG-GLFKAGPsaeslkttrnTLR 1480 Streptomyces ...
RUQ10137     2302 SSPQAIAESlgYKPYRQNg----fPKGQKVFQLkg----gkKIIAYDGTk------HTG-VGWKMYEspkd---fnnGKR 2363 Curtobacteriu...
Feature 1         ## #                  
4NTQ_A        223 IGTYDs---------gLNRIKD 235  Enterobacter cloacae subsp. cloacae ATCC 13047
WP_137864230  767 AGTFDr---------fLDPIGP 779  Sphingomonas
WP_130799228   78 DGSYGldisadgmvegLKWLKR 99   Streptomyces sp. OTB305
ACU77451     1468 DGTYDldvdgsgnvsgLKWVAK 1489 Catenulispora acidiphila DSM 44928
WP_082403179 3215 SGSYDvvknp-dgtigLQRIRK 3235 Saccharothrix sp. NRRL B-16348
AXX31226     2234 SGSYGlkisstgalegLERVRG 2255 Actinosynnema pretiosum subsp. pretiosum
WP_086678691 2245 SGTYDvgyss-aegpfLTWVGK 2265 Amycolatopsis pretoriensis
WP_019065796 2326 SGTFGigdlg-ggkygLSWIGE 2346 Streptomyces hokutonensis
WP_109977571 1481 SGSYD-----------LDKFGR 1491 Streptomyces sp. CS090A
RUQ10137     2364 SGTWNw---------nLTKDIR 2376 Curtobacterium sp. HSID17257

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