Conserved Protein Domain Family
T-box-like

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cd20682: T-box-like 
T-box DNA-binding domain; uncharacterized subfamily
The T-box family is an ancient group that appears to play a critical role in development in all animal species. These genes were uncovered on the basis of similarity to the DNA binding domain of murine Brachyury (T) gene product, the defining feature of the family. Common features shared by T-box family members are DNA-binding and transcriptional regulatory activity, a role in development and conserved expression patterns, most of the known genes in all species being expressed in mesoderm or mesoderm precursors.
Statistics
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PSSM-Id: 410333
Aligned: 8 rows
Threshold Bit Score: 336.668
Created: 23-Jul-2019
Updated: 25-Oct-2021
Structure
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Aligned Rows:
 
DNA binding
Feature 1:DNA binding site [nucleic acid binding site]
Evidence:
  • Comment:based on related T-box transcription factors bound with DNA
  • Comment:T-box monomers dimerize upon DNA binding; some form weak dimers, others tight dimers, some may bind as non-associating monomers where the dimer is kept in register by the DNA

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                   ##                                #                  
XP_022257847 142 IQVQLCqKELWNQFHGLGNEMIITKaGRRMFPALKVNVTGLDPdGYYLIWVEITAvdnnRYRYVYpsSQWMIAGAGDvpl 221 Atlantic horses...
XP_022244298 117 INVELYmQDLWKKFHLLGNEMIITKaGRRLFPALKVKISGLLPdEQYSVWIDIVPvdsnRYRYMYcnSRWMVAGKGNqlr 196 Atlantic horses...
PRD28622      22 IEMELIsSELWSQFHKLQNEMIITKsGRRIFPTLKALAKGLDPnRDYIIWIDIVPvdqlRYRYVYrsSQWIVAGSGEkhn 101 Nephila clavipes
XP_023235494 101 VRLELCsRSLWTQFSCIGNEMIVNKtGRRIFPPLKVKITGLQPeKNYVIWVEIAAvsenRYRYQYqsCKWVKAGIGEpqd 180 bark scorpion
XP_023243251  55 IKMKLVnCSLWLQFHRLENEMIITKaGRRIFPSLKFDVFNLNPdAYYLLWMDIVPvdrhRYRYAFpnSRWTIAGKCEths 134 bark scorpion
EKC21660      71 IQVELCqNELWHAFHNLGTEMIITKtGRRMFPAIRVKLHGLDPgYKYSVSLEFSQmdkqKYRYVYhsSKWMVSGLGDemi 150 Pacific oyster
EFX81442      61 AADLLC-RELWLEFHALGTEMIITKaGRRMFPSLKVRLSGLEDdVLYIVYVDMETvddkRHRYIYqsSKWVPGGPGDvph 139 common water flea
RUS86668     275 VLAELIhADLWSSFHNLGTEMIITKsGRRMFPAYKVRLNGLDPnKLYMVKLDFLQpdsrKYRYIYhsSQWVVSGSGDslp 354 eastern emerald...
Feature 1                                    #  #             ##                                 
XP_022257847 222 ptNRYLHpdiPAKGYh-LMARIVNFDKlKLTNSkqttekGQIALhSMHKYQPLIYIQKvetpftvp---------dqavd 291 Atlantic horses...
XP_022244298 197 vgTRYIHpdsPANGRq-WMAQTVSFDKlKLTNNkhpllkGQVVLhSMQKYQPRICIKRvdntgssk---------gvmae 266 Atlantic horses...
PRD28622     102 snSTYIHpdsPSSGKy-WMSKIIIFDKvKLTNSkelkskEQISLlSMHKYQPRFHIQKvidsskns---------fpkis 171 Nephila clavipes
XP_023235494 181 pqNKYIHpdsPATGRy-WMTQIVSFDKlKLTNNkypklpNQVIVhSMHKYQPRFYILPvedivtnv---------ekqin 250 bark scorpion
XP_023243251 135 dwNLYIHpdgVAQGSh-WMSQSVAFDKvKLTNNkeckqkGQIVLnSMHKYQPRLHIQLvdvrnrqn----------aapn 203 bark scorpion
EKC21660     151 rdQIYRHpdsPADGAv-LESQIVSFERiKLTNNdsp-kyGQISLlSMQRFVPRIHVHQisgdg----------------i 212 Pacific oyster
EFX81442     140 qeRHFLHpdgPQLGKfwNKQSCVAFDKlKLTNSrkpsqrDQIPLhSMHRYQPTLYIQPipndcrealsncsewwktfcwk 219 common water flea
RUS86668     355 eaPSYVAqegPISGKd-ICYQVVSFERlKLTNVeas-rpGQVSLvSMQKFQPRVVVEEhvqsp---------------tg 417 eastern emerald...
Feature 1                         ####    #  ##  #######  
XP_022257847 292 tkiAFQFSFPETVFITVTAYQNQEITKLKIASNPFAKGFRD 332 Atlantic horseshoe crab
XP_022244298 267 tteVKSFVFPETSFFTVTAYQNQQITKLKIASNPFAKGFRE 307 Atlantic horseshoe crab
PRD28622     172 sskSLTFTFPETQFLTVTAYQNQQITHLKIACNPFAKGFRE 212 Nephila clavipes
XP_023235494 251 pckALKFEFKETTFITVTAYQNQNIIKLKIYHNPFAKGFRE 291 bark scorpion
XP_023243251 204 aktSRHFEFIETSFIAVTAYQNQQITTLKIRSNPFAKGFRD 244 bark scorpion
EKC21660     213 kvrHFVASFPQTSFTAVTAYQNQEITKLKIARNPFAKGFRE 253 Pacific oyster
EFX81442     220 sssAASFTFPETQFITVTAYQNQQITRLKIASNPFAKGFRD 260 common water flea
RUS86668     418 rgeRYEIVFPQTSFIAVTAYQNQQITTLKIASNPFAKGFRD 458 eastern emerald elysia

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