3MI9,2W2H,3TNH,4IMY,4OR5


Conserved Protein Domain Family
CYCLIN_CCNT1_rpt1

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cd20595: CYCLIN_CCNT1_rpt1 
Click on image for an interactive view with Cn3D
first cyclin box found in cyclin-T1 (CCNT1)
CCNT1, also termed CycT1, is a host factor essential for HIV-1 replication in CD4 T cells and macrophages. It is a regulatory subunit of the cyclin-dependent kinase pair (CDK9/cyclin-T1) complex, also called positive transcription elongation factor B (P-TEFb), which is proposed to facilitate the transition from abortive to productive elongation by phosphorylating the CTD (C-terminal domain) of the large subunit of RNA polymerase II (RNA Pol II). CCNT1 contains two cyclin boxes. This model corresponds to the first one. The cyclin box is a protein binding domain.
Statistics
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PSSM-Id: 410298
Aligned: 10 rows
Threshold Bit Score: 297.737
Created: 12-Apr-2019
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
CDK interfaceHIV-1 Tat
Conserved site includes 20 residues -Click on image for an interactive view with Cn3D
Feature 1:CDK interface [polypeptide binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         ##                                                           ##               #
3MI9_B        10 KRWYFTREQLENSPSRRFGVDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTQFPGNSVAPAALF 89  human
2W2H_A         7 KRWYFTREQLENSPSRRFGLDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFHRNSVAPAALF 86  horse
3TNH_B        10 KRWYFTREQLENSPSRRFGVDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTQFPGNSVAPAALF 89  human
4IMY_B        10 KRWYFTREQLENSPSRRFGVDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTQFPGNSVAPAALF 89  human
4OR5_B        10 KRWYFTREQLENSPSRRFGVDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTQFPGNSVAPAALF 89  human
O60563        10 KRWYFTREQLENSPSRRFGVDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTQFPGNSVAPAALF 89  human
GCF52539      23 RRWYFSREQLARSPSRRAGIDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMVQSFTQFHRNSVAPAALF 102 Paroedura picta
XP_005991486  12 RKWYFTREQIENSPSRRAGQDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFHRNAVAPAVLF 91  coelacanth
OCT92751      34 SRWYFTREQLERSPSRRAGLDADKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMVQSFTRFHRNSVAPAALF 113 African clawed ...
AAH44435      18 NKWYFTREQIENSPSRRAGLDPDKELLYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMVQSFTRFHRNVIAPAALF 97  zebrafish
Feature 1        #  #  #  ####                           #   #  #   ### ## 
3MI9_B        90 LAAKVEEQPKKLEHVIKVAHTCLHPQEslPDTRSEAYLQQVQDLVILESIILQTLGFE 147 human
2W2H_A        87 LAAKVEEQPKKLEHVIKVAHTCLHPQEslPDTRSEAYLQQVQDLVILESIILQTLGFE 144 horse
3TNH_B        90 LAAKVEEQPKKLEHVIKVAHTCLHPQEslPDTRSEAYLQQVQDLVILESIILQTLGFE 147 human
4IMY_B        90 LAAKVEEQPKKLEHVIKVAHTCLHPQEslPDTRSEAYLQQVQDLVILESIILQTLGFE 147 human
4OR5_B        90 LAAKVEEQPKKLEHVIKVAHTCLHPQEslPDTRSEAYLQQVQDLVILESIILQTLGFE 147 human
O60563        90 LAAKVEEQPKKLEHVIKVAHTCLHPQEslPDTRSEAYLQQVQDLVILESIILQTLGFE 147 human
GCF52539     103 LAAKVEEQPRKLEHVIKVAHACLHPQEalPDTRSEAYLQQAQDLVILESIILQTLGFE 160 Paroedura picta
XP_005991486  92 LAAKVEEQPRKLEHVIKVTHACLNPQEpsPDIRSEAYLQQAQDLVILENIILQTLGFE 149 coelacanth
OCT92751     114 LAAKVEEQPRKLEHVIRVAHACLNPQEpaPDIRSEAYQQQAQDLVILESIILQTLGFE 171 African clawed frog
AAH44435      98 LAAKVEEQPRKLEHVIKVTHACLNPQDpsPDTRSDTYLQQAQDLVILESIILQTLGFE 155 zebrafish

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