1D3U,1AIS


Conserved Protein Domain Family
CYCLIN_TFIIB_archaea_like_rpt2

?
cd20550: CYCLIN_TFIIB_archaea_like_rpt2 
Click on image for an interactive view with Cn3D
second cyclin box found in archaeal transcription initiation factor IIB (TFIIB) and similar proteins
Archaeal TFIIB stabilizes TATA-binding protein (TBP) binding to an archaeal box-A promoter. It is also responsible for recruiting RNA polymerase II to the pre-initiation complex (DNA-TBP-TFIIB). TFIIB contains two cyclin boxes. This model corresponds to the second one. The cyclin box fold is generally a protein binding domain, but binds DNA in TFIIB.
Statistics
?
PSSM-Id: 410253
Aligned: 28 rows
Threshold Bit Score: 106.517
Created: 12-Apr-2019
Updated: 25-Oct-2021
Structure
?
Program:
Drawing:
Aligned Rows:
 
DNA binding
Conserved site includes 16 residues -Click on image for an interactive view with Cn3D
Feature 1:DNA binding site [nucleic acid binding site]
Evidence:

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                                         ####         #        # ##        ## ## # ##
1D3U_B    108 KPTDYVNKFADELGLsEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGeKRTQREVAEVARVTEVTVRNRY 187 Pyrococcus woesei
AAR39126  209 SPADFVYRYASELNLpPEVTATAIEIIEEAKKKNIVSGRGPQGIAAAALYIAAIKHGkYVPLKKIGEIAKVTEVTIKNRY 288 Nanoarchaeum equit...
Q9HJM2    215 TPFSYISQFCNKLDLdKQAIVISEDIVRQAMSMGISSGKGPTGIAAAAIYIASVKVGkPRTQKEIARISGVTEVTIRNRY 294 Thermoplasma acido...
OEU76983  193 DPALFIPRFCSELGVsPTTRERAIEILNDDKGVEATKGWGPIGTAAAAIYIAAIVGGeYRTEREIAKVMGTTEITIRNRY 272 Desulfuromonadales...
RLD91972   82 DPIKFVPSIAAKVNLgSQAEAYAIDLLRAAKRRGGLTGKDPRGLAAAALYKAGIVTNnKRIQKEIAEAAGTTEVTLRNRL 161 Aquificae bacterium
P58110    201 KPAEYIPKILYKLNLpPIIGTKASELVDLMHKQGLTSGKGYLSLSAASVYLISALMDiKKTQKEVADSLDITEVTIRNRY 280 Sulfolobus solfata...
ABX12520  214 DPIKCISRIASKAGLsEKTKRKATKILQTAEENKISAGKDPMGLAAAALYVACVTNGeNKTQRDVAEAAGVTEVTIRNRY 293 Nitrosopumilus mar...
ABK78485  215 DSIQCVARISSHIGIaEKTKRYAVVVLKEAQKHEVSAGKDPMGLAAAALYLSCVKNGeDKTQRDIADAANVTEVTIRNRY 294 Cenarchaeum symbio...
RLC65922  134 QSPRYISKYVSQLSVtGEVEVLAIQILETAAKLKLLNGRNPASMAAAATYIACCITGeRRTQEQIAQVGGITHVTLRNRY 213 Chloroflexi bacterium
O23215    228 SISVHMPRFCTLLQLnKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDkRKTQAEICKITGLTEVTLRKVY 307 thale cress
Feature 1     #      
1D3U_B    188 KELVEKL 194 Pyrococcus woesei
AAR39126  289 KEIINSL 295 Nanoarchaeum equitans Kin4-M
Q9HJM2    295 KEISKAL 301 Thermoplasma acidophilum
OEU76983  273 KDLEKRL 279 Desulfuromonadales bacterium C00003107
RLD91972  162 RGIEALL 168 Aquificae bacterium
P58110    281 KDIVDNF 287 Sulfolobus solfataricus
ABX12520  294 KGLKVAL 300 Nitrosopumilus maritimus SCM1
ABK78485  295 KGLKDSL 301 Cenarchaeum symbiosum A
RLC65922  214 QELSRMI 220 Chloroflexi bacterium
O23215    308 KELLENW 314 thale cress

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap