4YOZ,1GUX


Conserved Protein Domain Family
CYCLIN_RB-like

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cd20548: CYCLIN_RB-like 
Click on image for an interactive view with Cn3D
cyclin box found in retinoblastoma-associated protein (RB) family
The RB family includes retinoblastoma-associated protein (RB), and two retinoblastoma-like proteins, RBL1 and RBL2. RB, also called p105-Rb, pRb, or pp110, is a key regulator of entry into cell division, and also acts as a tumor suppressor. It promotes G0-G1 transition when phosphorylated by CDK3/cyclin-C. It also acts as a transcription repressor of E2F1 target genes. RB is directly involved in heterochromatin formation by maintaining overall chromatin structure. It recruits and targets histone methyltransferases SUV39H1, KMT5B and KMT5C, leading to epigenetic transcriptional repression. RBL1 and RBL2 are also key regulators of entry into cell division. RBL1 and RBL2 recruit and target histone methyltransferases KMT5B and KMT5C, leading to epigenetic transcriptional repression. They control histone H4 'Lys-20' trimethylation and probably act as transcription repressors by recruiting chromatin-modifying enzymes to promoters. They may also act as tumor suppressors. Members of this family contain one cyclin box. The cyclin box is a protein binding domain.
Statistics
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PSSM-Id: 410251
Aligned: 35 rows
Threshold Bit Score: 94.2973
Created: 12-Apr-2019
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
LxCxE peptide
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:LxCxE peptide binding site [polypeptide binding site]
Evidence:
  • Comment:The HPV E7 peptide contains the LxCxE motif, shared by other Rb-binding viral and cellular proteins.
  • Structure:1GUX: Human RB binds HPV E7 peptide; contacts at 4A
    View structure with Cn3D
  • Citation:PMID 9495340
  • Structure:4YOZ: Human RBL1 binds HPV E7 peptide; contacts at 4A
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                     #   
4YOZ_A        223 LALFYRKVYHLASVRLRDLCLKld------------vsNELRRKIWTCFEFTLvhcpd---lmkdRHLDQLLLCAFYIMA 287  human
1GUX_B         12 LSLFYKKVYRLAYLRLNTLCERlls-----------ehPELEHIIWTLFQHTLqneye---lmrdRHLDQIMMCSMYGIC 77   human
XP_016605018  741 IQCLLSQATLMSIVRLRHLCTAlhlsp-------dtaqKLLEWGFKHEHRHHLlq---------nRHVDVYVMACVYAAA 804  Spizellomyces...
PAA64183       89 LQAFYRHLHRLCDTRLAQLSSElhl-----------lnPVSKQRAAVIINRVLrdnpg---llrnRHLDHVIACGLFAAA 154  Macrostomum l...
XP_002288308 1014 VSYMMNNLLSIIKRRVQALCNVlsl----------pnsIAVHDKTMMVFTTMLcyrid---lffdRHPDQIMLCSMYAAC 1080 Thalassiosira...
ORY33528      646 IQSMLSSLTKLLTDRAIDLCNRign-----------vsDIIQHRVTKLIESVLnkenqe-kllrkRNADVVMISCVFAGL 713  Rhizoclosmati...
XP_004990371  554 WSVLQTRLLSLIQKRLVALTKLldl----------pqkSPVVLLAGVAMKHIVqtprtlqrlalgRHLDTLLLCSLFACV 623  Salpingoeca r...
XP_005650937   99 LQDFMVTVSQLAMSRAQQAALSlidrleelaliptfvqDCLATVDAMLMNHLDll--------fnQHLSRLVSCCVYGTS 170  Coccomyxa sub...
Q54FX2        890 IQNFIKKVSTLIIAKCRKLIHAmg------------lsSDYVVQIYQVMIKILidetl---lfknREIDVLLICSIYAIC 954  Dictyostelium...
GAX74313      227 LSNFLVSLAHLAAVRAHSTALRldpfyk-----eqessTQAAQLAAKVADHIIaehid---lcfgLHLSVIVACCVFSVF 298  Chlamydomonas...
Feature 1         ##         ###                                                                  
4YOZ_A        288 KVTke----erTFQEIMKSYRnqpqanshvyr----------------------------------svllksikeerGDL 329  human
1GUX_B         78 KVKni----dlKFKIIVTAYKdlphavqetf------------------------------------krvlikeeeyDSI 117  human
XP_016605018  805 KMEgk----imTFKSVVEGYRkqpqfdektat-----------------------------------siyisqsepsVDL 845  Spizellomyces...
PAA64183      155 RAAqpsppcpiRFAHILAAHRrvanltgssstvaaggq----------------------atdtlfrtvpldnrgnaGDI 212  Macrostomum l...
XP_002288308 1081 AKMkla--peiDFTKINDAYAetnkhelsphvvhk----------------------------ilfqikfssdndgiGDI 1130 Thalassiosira...
ORY33528      714 RLAki----piKLRQLVQYYDlqpqaeketml----------------------------------lirlsddnaelADI 755  Rhizoclosmati...
XP_004990371  624 QRFsd----tlTMRSIILHYRnmdhasraawtavp-----------------------------sddvsddddadatVDI 670  Salpingoeca r...
XP_005650937  171 RMHnv----vvSIKRVNQAVItaaphhgmelfqe------------------------------vsesigedtegpvRDI 216  Coccomyxa sub...
Q54FX2        955 KVNsk----niTFKAIIDKSCisakvykevyigndennnnnnnnnnnnnnnnnnnnnninnnnnnnennnnnnnpvkGDI 1030 Dictyostelium...
GAX74313      299 KVLrr----alQFKALLHDMKvaadvesallmqqlgvrgatdl-------------dqvfaqvpmcgphgcedqpetADI 361  Chlamydomonas...
Feature 1         #  ##   
4YOZ_A        330 IKFYNTIY 337  human
1GUX_B        118 IVFYNSVF 125  human
XP_016605018  846 ITYYNRVF 853  Spizellomyces punctatus DAOM BR117
PAA64183      213 IQFYNAVF 220  Macrostomum lignano
XP_002288308 1131 ISFYNVSL 1138 Thalassiosira pseudonana CCMP1335
ORY33528      756 SKFYNQVF 763  Rhizoclosmatium globosum
XP_004990371  671 VEFYNTTF 678  Salpingoeca rosetta
XP_005650937  217 RQLYNDVF 224  Coccomyxa subellipsoidea C-169
Q54FX2       1031 ILFYNKIF 1038 Dictyostelium discoideum
GAX74313      362 RVWYNKVF 369  Chlamydomonas eustigma

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