Conserved Protein Domain Family
CYCLIN_ScCTK2-like_rpt1
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cd20547: CYCLIN_ScCTK2-like_rpt1 
first cyclin box found in Saccharomyces cerevisiae CTD kinase subunit 2 (ScCTK2) and similar proteins
CTK2, also called CTD kinase subunit beta, CTDK-I subunit beta, or CTD kinase 38 kDa subunit, is the cyclin subunit of the CTDK-I complex, which hyperphosphorylates the C-terminal heptapeptide repeat domain (CTD) of the largest RNA polymerase II subunit. CTK2 contains two cyclin boxes. This model corresponds to the first one. The cyclin box is a protein binding domain.
Links
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Statistics
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PSSM-Id: 410250
Aligned: 8 rows
Threshold Bit Score: 145.952
Created: 15-Apr-2019
Updated: 25-Oct-2021
Structure
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Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
1169121   38 KKLAVFKFLSDLCVQLKFPRKTLETAVYFYQRYHLFnrfe----------tevcYTVATSCLTLGCKEVETIKKTNDICT 107 baker's yeast
EDK36514  38 RKHQVFQFLFQVVRQLKFPLRVLSTAMNYFQRFYLFnmfqemndfenedlekdpFTVALTSLFLASKNEDCIKKLRDIQA 117 Meyerozyma guillier...
ODV91874  34 FHQTSYGFMTQLAEKLKLPRRTIETSMKLYWRYYIFstepv--------ndqknYQIVCACLFLASKTEDTVKRSKEIAE 105 Tortispora caseinol...
CDO57812  49 LGQAAEVIFGQACKDLKFPVKTLSTAMMLVQHYCLFngnnv---------lstnLEITSTCLLIASKIEDTPKKSKDIIA 119 Geotrichum candidum
O59748    37 LRMQAFAWISTLSKTLKFPVRTSGLAMLLYSRFQLFfpvn----------eiplLECATACLVVASKIEDTAKKFRDILL 106 fission yeast
CCJ28375 101 IRFQACTWIYHVGRSMKFPIRTIGSAMIIYHRFHLFnpmse---------fsyiVDTAAACLFVACKMEDTSKKLKDILI 171 Pneumocystis jirovecii
PZU02131  35 MQMAACSFIAAVGAKLGCPQRTMGTAQLLYQRFHLFhapt----------dfslHEVALTCLFTSAKLNDTQKRVHEVVL 104 Francisella sp.
RYP39602 430 YRLKGIQHILALKTEVRLPIKTYVAAAVFYHRFRLKhlgt----------qhhwRDGAIACLFLACKAEDTQKKSREILC 499 Monosporascus sp. M...

1169121  108 LSLRLRnvvki-----------------ntdilENFKKRVFQIELRILESCSFDY 145 baker's yeast
EDK36514 118 VANKLReidetrkiv---------indaavpynDAQRKAIMGIEYKLLQTIKFDF 163 Meyerozyma guilliermondii ATCC 6260
ODV91874 106 LATDLLakqks-----------------ldqsaDSFRKAMLQYESSLLQLNSFDF 143 Tortispora caseinolytica NRRL Y-17796
CDO57812 120 CLYHGFkysp--------------------tklEEIRIHVLHLERAVLETLGFDF 154 Geotrichum candidum
O59748   107 AHYLQKhpgsevdah----------sqvcykliEENKKRILGLERMTLELICFDF 151 fission yeast
CCJ28375 172 ASYNLKhpngpdi-------------sfesqtiEEQKKRIIGLERMVLETSCFDF 213 Pneumocystis jirovecii
PZU02131 105 ASYVFRypelistpdrgdwiahahvsdvdqemlHREQAAIVSLERLLLPCLCYNF 159 Francisella sp.
RYP39602 500 ANYNMShsdkkt---------------pddkffDPPQRLIIGLERLVIESIHFDF 539 Monosporascus sp. MG133
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