Conserved Protein Domain Family
CYCLIN_SpCG1C-like_rpt1

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cd20545: CYCLIN_SpCG1C-like_rpt1 
first cyclin box found in Schizosaccharomyces pombe cyclin C homolog 1 (pch1) and similar proteins
Cyclin pch1 is essential for progression through the whole cell cycle. It is a homolog of cyclin T; it forms a heterodimer with its partner kinase, cyclin-dependent kinase 9 (CDK9), that can phosphorylate both the pol II C-terminal domain (CTD) and the CTD of transcription elongation factor Spt5. Yeast Cdk9/Pch1, with mRNA capping enzyme Pct1, may also form an elongation checkpoint for mRNA quality control. Members of this family contain two cyclin boxes. This model corresponds to the first one. The cyclin box is a protein binding domain.
Statistics
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PSSM-Id: 410248
Aligned: 7 rows
Threshold Bit Score: 182.624
Created: 12-Apr-2019
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
O74627        40 EEIQRSKGCNFIINVGLRlklpQTALATANIYFHRFYLRFSLKn-------yHYYEVAATCIFLATKVEDsvRKLRDIVI 112 Schizosaccharom...
XP_018224316  32 EQIDRGKGVNFIIQVGSKlklpQLTLSTAAVFLHRFYMRFSLAk-------yHYYEIAATCILLATKVEEscRKLRNIII 104 Pneumocystis ca...
CCX06851      93 EREQRSKGCNFITQLGIQlklpQITLATASTYLHRFYMQNSLKq-------hHYYETAAVCLFLATKVDEngRKFAHIVE 165 Pyronema omphal...
ODV89285      60 EVESRFKGINFIIMAASRlrlpHNTIFAASCYFHRFYIRKSFRk-------yHQYDIAATCLFIAAKSEEtaRRVKDVVI 132 Tortispora case...
XP_023910411  57 ERDTRSKGINFIIQVGVMlklpQLTISTAAVFFQRFLMRASMKkarngipklHHYQIAATCLFLATKVEEscRKMKELIL 136 Quercus suber
KIM87044      35 ELYDRSRGAEFLFRLGSSlglpSTAMFTAATWFHRFFMRYSLEd-------yHRQDVAASCIFLATKTEEcgRKLRDVAR 107 Piloderma croce...
XP_006960237  27 EQKYRVNGVNWLLRIGVTarvrNDSLYNACTYFHRFYMRNSFAd-------fEPEEIALTCLFLACKSQDsmKHVTHLAA 99  Wallemia mellic...
O74627       113 NCakva-----------qknsNVLVDEQTKEYWRWRDVILYTEEVLLEALCFDF 155 Schizosaccharomyces pombe 972h-
XP_018224316 105 ACakvg-----------qknpDLIIDEQSKEYWRWRDVIIYNEEILLEALCFDL 147 Pneumocystis carinii B80
CCX06851     166 ACvrsa-----------qknlTLNVNREDREYWRWKDCILNKEEWLLESLCFDL 208 Pyronema omphalodes CBS 100304
ODV89285     133 VCakva-----------qkndSAVIDEQSKEFWRWRDMILFNELVVLETICFDL 175 Tortispora caseinolytica NRRL Y-17796
XP_023910411 137 AFcrva-----------qknpNLVVDEQSKDWWRWRDCILHNEDVLLETLCFDL 179 Quercus suber
KIM87044     108 VCeaki-----------ankeVSFIPADGKEVEARQNSILLTEEVLLEALCFDF 150 Piloderma croceum F 1598
XP_006960237 100 LAvykrrtdiakaegkkpstgEPMQIKDEPEVLKLQDSMLSAEIHLLRTLAFDL 153 Wallemia mellicola CBS 633.66
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