4CXA,2I53,4NST,6B3E


Conserved Protein Domain Family
CYCLIN_CCNK_rpt2

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cd20531: CYCLIN_CCNK_rpt2 
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second cyclin box found in cyclin-K (CCNK) and similar proteins
CCNK is a novel RNA polymerase II-associated C-type cyclin possessing both carboxy-terminal domain kinase and Cdk-activating kinase activity. It is a regulatory subunit of cyclin-dependent kinases that mediates the activation of these target kinases. It plays a role in transcriptional regulation by controlling the phosphorylation of the C-terminal domain (CTD) of the large subunit of RNA polymerase II (POLR2A). CCNK contains two cyclin boxes. This model corresponds to the second one. The cyclin box is a protein binding domain.
Statistics
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PSSM-Id: 410234
Aligned: 27 rows
Threshold Bit Score: 144.018
Created: 12-Apr-2019
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4CXA_B       150 EHPYQFLLKYAKQLKgdk------nkiQKLVQMAWTFVNDSLCTTLSLqWEPEIIAVAVMYLAGRLCKFEiqew---tsk 220 human
CBY37375     146 THPYKYIIEYAEQLRndiegkteakqiESLVQQSWNFTNDSLQTTLCLqWEPEIVAISMIFLSAKLAKVDvl-------- 217 Oikopleura dioica
XP_003385094 150 DHPYGYLLKFAKHMKgek------qtiEKVLQMAWTFINDSLCTTLCLqWEPPVVAVALLYLAGKLSKFDlqsa----fq 219 Amphimedon quee...
XP_006819288 138 DHPYTYLLKYARVIKgdk------akiQQLVQMGWTFINDSLCTTLCLqWEPQVLAVAVMYLAGRLSKSDvldw---qck 208 Saccoglossus ko...
XP_011270139 195 EHPYPFVMKFCKKLKr----------qGAFAQLVWNYVNDSLRTTLCLrYKPVLIAVAAMHLAAVTQRAElpn------g 258 Capsaspora owcz...
XP_013398263 138 DHPYSFLLRFAKGIKgdk------qkvQKMVQMAWTFINDGLCTTLCLeWEPDIVAVALIYLASRLSKFDitdwe-grvp 210 Lingula anatina
OWF53383     141 EHPYGYLLKFAKFIKgdk------ekiQKLVQMAWTFINDSLCTTQCLqWEPEVISVSLMYLGTRLTKFDiqdwh-gkvp 213 Yesso scallop
PFX21902      88 EHPYPSLLKFGKALKgdr------akiNKLVQMAWTFLNDSLSTPLCLrYKPEVISVAMIALAAKFNNHDlqat----ss 157 Stylophora pist...
RDD44318     138 QHPYKYIVKFAKNLKddr------aqiEKVVQMAWNFVNDSLSTTLCLqWKPQVVAVSLLHLAAKLSKYNlsaapdgphy 211 Trichoplax sp. H2
VDP30869     138 SHPYSYLLQFAKRIKgnq------eklKELVQMSWSFINDSLATTLCLqWEPEIVACAVLYLATRMSKFTiedw---egr 208 Schistosoma cur...
4CXA_B       221 pMYRRWWEQFVqdv--pvDVLEDICHQILDLY 250 human
CBY37375     218 aASTKWWEKFIpdl--smELIESVCHSVLDIY 247 Oikopleura dioica
XP_003385094 220 aKSRSWWRQFVltv--daHDLESICHQVLDVY 249 Amphimedon queenslandica
XP_006819288 209 gSRTKWWDPFIedv--tlEMLEDICHQVLDLY 238 Saccoglossus kowalevskii
XP_011270139 259 sNGEPWWKLLDadlspslELIQYIASVINDLY 290 Capsaspora owczarzaki ATCC 30864
XP_013398263 211 gTKGKWWEHFVeda--tlELLEDICHRVLDLY 240 Lingula anatina
OWF53383     214 gTKTRWWEFLVedi--tvELMEDICHKVLDLY 243 Yesso scallop
PFX21902     158 tPGKTWYHSFTkga--teSVVEDICDLMLELY 187 Stylophora pistillata
RDD44318     212 dHSKSWWQHFLpei--nsDVLEDICLQMLDFY 241 Trichoplax sp. H2
VDP30869     209 qPGQRWWECFVegm--stEVMEDICHKILDLY 238 Schistosoma curassoni
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