3KUF


Conserved Protein Domain Family
Tudor_Agenet_FXR1_rpt1

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cd20472: Tudor_Agenet_FXR1_rpt1 
first Tudor-like Agenet domain found in fragile X mental retardation syndrome-related protein 1 (FXR1) and similar proteins
FXR1 is an RNA binding protein that interacts with the functionally similar proteins FMR1 and FXR2. It shuttles between the nucleus and cytoplasm and associates with polyribosomes, predominantly with the 60S ribosomal subunit. FXR1 contains two copies of the Tudor-like Agenet domain. The model corresponds to the first one. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.
Statistics
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PSSM-Id: 410543
Aligned: 6 rows
Threshold Bit Score: 125.892
Created: 30-May-2019
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
putative
Conserved site includes 6 residues -Click on image for an interactive view with Cn3D
Feature 1:putative peptide binding site [polypeptide binding site]
Evidence:
  • Comment:based on the structures of other Tudor domain superfamily members with bound methylated/dimethylated peptides
  • Comment:In general, the Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1               #   # #               #   # #                   
3KUF_A         2 ELTVEVRGSNGAFYKGFIKDVHEDSLTVVFENNWQPERQVPFNEVRLPPPPDIKK 56  human
XP_005991965   3 ELTVEVRGSNGAFYKGFVKDVHDDSLTIVFENNWQPERQVPFSDVRLPPPSDVKK 57  coelacanth
NP_001012619   3 ELTVEVRGSNGAFYKGFIKDVHEDSLTVVFENNWQPERQVPFNEVRLPPPPDIKK 57  chicken
Q7ZTQ5         3 DLTVEVRGSNGAFYKGFIKDVHEDSLTVVFENNWQPERQVPFNEVRMPPLPDIKK 57  African clawed frog
P51114         3 ELTVEVRGSNGAFYKGFIKDVHEDSLTVVFENNWQPERQVPFNEVRLPPPPDIKK 57  human
AAD53274       2 ELTVEVRGSNGAYYKGFVRDVHDDSLSISFENNWQPERQVPFSDVRLPPSADTKK 56  zebrafish

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