4QVZ,2BKD,4QW2,4OVA


Conserved Protein Domain Family
Tudor_Agenet_FMR1_rpt1

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cd20471: Tudor_Agenet_FMR1_rpt1 
first Tudor-like Agenet domain found in synaptic functional regulator FMR1 and similar proteins
FMR1, also called fragile X mental retardation protein 1 (FMRP), is a multifunctional polyribosome-associated RNA-binding protein that plays a central role in neuronal development and synaptic plasticity through the regulation of alternative mRNA splicing, mRNA stability, mRNA dendritic transport and postsynaptic local protein synthesis of a subset of mRNAs. FMR1 contains two copies of the Tudor-like Agenet domain. The model corresponds to the first one. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.
Statistics
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PSSM-Id: 410542
Aligned: 10 rows
Threshold Bit Score: 114.638
Created: 30-May-2019
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
putative
Conserved site includes 6 residues -Click on image for an interactive view with Cn3D
Feature 1:putative peptide binding site [polypeptide binding site]
Evidence:
  • Comment:based on the structures of other Tudor domain superfamily members with bound methylated/dimethylated peptides
  • Comment:In general, the Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                 #   # #               #   # #                 
4QVZ_A         2 MEELVVEVRGSNGAFYKAFVKDVHEDSITVAFENNWQPDRQIPFHDVRFPPPVGY 56  human
2BKD_N         1 MEELVVEVRGSNGAFYKAFVKDVXEDSITVAFENNWQPDRQIPFXDVRFPPPVGY 55  human
4QW2_A         2 MEELVVEVRGSNGAFYKAFVKDVHEDSITVAFENNWQPDRQIPFHDVRFPPPVGY 56  human
4OVA_A         1 MEELVVEVRGSNGAFYKAFVKDVHEDSITVAFENNWQPDRQIPFHDVRFPPPVGY 55  human
XP_007891061   1 MEDLMVEVRGSNGAFYKAIVKDVHDESLTVAFENNWQPERQIPFHDVRFPPPAGY 55  elephant shark
Q2KHP9         1 MEELAVEVRGSNGAFYKAFVKDVHEDSITVTFENNWQQEKQIPFHDVRFPPPSGY 55  African clawed frog
Q06787         1 MEELVVEVRGSNGAFYKAFVKDVHEDSITVAFENNWQPDRQIPFHDVRFPPPVGY 55  human
XP_005991925   1 MEELLVEVRGSNGAFYKAFVKDVHEDSVTVTFENNWQPERQIPFHDVRFPPPVGY 55  coelacanth
CAG32770       1 MEELVVEVRGSNGAFYKAFVKDVHEDSITVAFENNWQPERQIPFHDVRFPPPAGY 55  chicken
AAH54657       1 MDELAVEVRGASGAFYKAYIKDVHESTVTVAFENNWQPERQISFQDVRFPPPTGF 55  zebrafish

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