2XK0


Conserved Protein Domain Family
Tudor_dPCL-like

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cd20452: Tudor_dPCL-like 
Tudor domain found in Drosophila melanogaster Polycomb protein PCL (dPCL)and similar proteins
dPCL, also called Polycomblike protein, is a Polycomb group (PcG) protein that is specifically required during the first 6 hours of embryogenesis to establish the repressed state. dPCL is a component of the Esc/E(z) complex, which methylates 'Lys-9' and 'Lys-27' residues of histone H3, leading to transcriptional repression of the affected target gene. Like other PCL family proteins, it consists of an N-terminal Tudor domain followed by two PHD domains, and a C-terminal MTF2 domain. PCL proteins specifically recognize tri-methylated H3K36 (H3K36me3) through their N-terminal Tudor domains.
Statistics
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PSSM-Id: 410523
Aligned: 9 rows
Threshold Bit Score: 81.6168
Created: 11-Dec-2018
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
putative
Conserved site includes 11 residues -Click on image for an interactive view with Cn3D
Feature 1:putative peptide binding site [polypeptide binding site]
Evidence:
  • Comment:Based the structure evidence that Homo sapiens PHF1 binds H3K36me3.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                  #  #      ###                 ##### #            
2XK0_A         14 VTYALQEDVFIKCn---DGRFYLGTIIDQTs--DQYLIRFDDQSEQWCEPDKLRKLGG 66   fruit fly
Q24459        349 VTYALQEDVFIKCn---DGRFYLGTIIDQTs--DQYLIRFDDQSEQWCEPDKLRKLGG 401  fruit fly
XP_026680894   18 PMFSEGEEVLVRMk---EGRYFLGTVNQINaeeEQCLVKFADGTELWSKFVDINSTAV 72   Asian citrus psyllid
CRK99986       83 TEFSMNEDVLMKSiddkLERYYLGTIVRIKn--GNYLVKFDDNTEKWATETGLKKFTT 138  Clunio marinus
ETN66764       92 VEYRINQDVLVRHp---DGRLYLGTVIGMHd--MQYQVQYDDNRVEWTNKDALNKLDS 144  Anopheles darlingi
XP_018902967   27 VMFNPGEEVLVNH----MNRFIFGYVVQADlpgEKCLVKYDDGNEKWCSFKYVRRLIP 80   Bemisia tabaci
XP_015375707   27 KSYICGEEVLVHLn---DERFYLGFIAKLRykeSKCLVKFGDNTVKWVFLKNVTRMTC 81   Russian wheat aphid
EFX83722       25 VTFTEGEDVLLHDe---DGLFIFGTIVQVLtfqEKCLIQFGDDTERWAHFRDLRKIKI 79   common water flea
BAW19575       28 AEFCPGQDVLLKQk---DGRYYLGTVVEVDgirEQCLVKFGDNTDSWSSFKDLTKLST 82   Gnatocerus cornutus

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