4BD3,2E5Q


Conserved Protein Domain Family
Tudor_PHF19

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cd20451: Tudor_PHF19 
Tudor domain found in PHD finger protein1 (PHF19) and similar proteins
PHF19, also called Polycomb-like protein 3 (PCL3), is a component of the Polycomb repressive complex 2 (PRC2), which is the major H3K27 methyltransferase that regulates pluripotency, differentiation, and tumorigenesis through catalysis of histone H3 lysine 27 trimethylation (H3K27me3) on chromatin. PHF19 consists of an N-terminal Tudor domain followed by two PHD domains, and a C-terminal MTF2 domain. It binds trimethylated histone H3 Lys36 (H3K36me3) through its Tudor domain and recruits the PRC2 complex and the H3K36me3 demethylase NO66 to embryonic stem cell genes during differentiation. Moreover, PHF19 and its upstream regulator, Akt, play roles in the phenotype switch of melanoma cells from proliferative to invasive states.
Statistics
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PSSM-Id: 410522
Aligned: 6 rows
Threshold Bit Score: 120.5
Created: 11-Dec-2018
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
peptide binding
Conserved site includes 21 residues -Click on image for an interactive view with Cn3D
Feature 1:peptide binding site [polypeptide binding site]
Evidence:
  • Structure:4BD3; Homo sapiens PHF19 in complex with Histone H3, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                 # ## ######                ##### #       ##  ####
4BD3_A          2 KLTEGQYVLCRWtDGLYYLGKIKRVSsSKQSCLVTFEDNSKYWVLWKDIQHAGVPGE 58   human
2E5Q_A          7 GLTEGQYVLCRWtDGLYYLGKIKRVSsSKQSCLVTFEDNSKYWVLWKDIQHAGVPGE 63   human
NP_001121998   37 SLTVGQYVLCCWsDGLYYLGKIQRVStSKQSCFVSFEDNSKFWVLWKDIQHAGIPGE 93   zebrafish
KQL56928     1678 KLTEGQYVLCRWtDGLYYLGKIKRVSgSKQSCLVTFEDNSKYWVLWKDIQHAGVPGE 1734 blue-fronted amazon
XP_005987480   41 KLTDGQYVLCRWtDGLYYLGKIKRVSvSKQRCLVTFEDNSKYWVLWKDIQHAGNPGE 97   coelacanth
NP_001072446   38 SQAEGQYVLCRWtDGLYYLGKIKRVSsSKQSCLVTFEDNSKYWVLFKDIQHAGVPGE 94   tropical clawed frog

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