5M9O,2E6N,2HQX,2O4X,3BDL,3OMG,2WAC


Conserved Protein Domain Family
Tudor_TDRD11

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cd20433: Tudor_TDRD11 
Tudor domain found in Tudor domain-containing protein 11 (TDRD11) and similar proteins
TDRD11, also called Staphylococcal nuclease domain-containing protein 1 (SND1), 100 kDa coactivator, EBNA2 coactivator p100, or p100 co-activator, is a multifunctional protein that is reportedly associated with different types of RNA molecules, including mRNA, miRNA, pre-miRNA, and dsRNA. It has been implicated in a number of biological processes in eukaryotic cells, including the cell cycle, DNA damage repair, proliferation, and apoptosis. TDRD11 is overexpressed in multiple cancers and functions as an oncogene. It contains multiple Staphylococcal nuclease (SN) domains and a C-terminal Tudor domain. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.
Statistics
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PSSM-Id: 410504
Aligned: 29 rows
Threshold Bit Score: 109.697
Created: 27-Oct-2006
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
peptide binding
Conserved site includes 7 residues -Click on image for an interactive view with Cn3D
Feature 1:peptide binding site [polypeptide binding site]
Evidence:
  • Structure:5M9O; Homo sapiens TDRD11 in complex with a symmetrically dimethylated E2F peptide, contacts at 4A
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             #                               #    #   #                #  # #           
5M9O_A        27 TGTQLEKLMENMRNDIASHppveGSYAPRRGEFCIAKFV---DGEWYRARVEKVESpaKIHVFYIDYGNREVLPStRLGT 103  human
2WAC_A        25 SGSKLESLMSKLHADFQSNppiaGSYTPKRGDLVAAQFTl--DNQWYRAKVERVQGs-NATVLYIDYGNKETLPTnRLAA 101  fruit fly
NP_494839    714 DGPKIEKMTTEMRQALAEHpplaGSYTTKRGDLCVAKFSq--DGQWYRCKVESVRAg-QAEIVYIDYGNRETIEAvKLAQ 790  Caenorhabditis...
EFX77404     702 QGQALEQLMNQLRQELNTNpplaGAYVPKKGDICAAKFS---DGEWYRARVEKVAGn-QVHLLYIDYGNREITTAvKCVS 777  common water flea
KPM05620     609 DGPEIENLLHQLRQEADSNppipGSCKPKKGDLVIAKFSe--DGQWYRAKIEKIINanESQVLYIDYGNREVLDNkNISS 686  Sarcoptes scabiei
PVD28669     443 DGPQLEKMMDELRKEMESNpplpGAYTPKRGDLCASKFSg--DSQWYRAKVLKVENg-KANILFIDFGNKEDTLItNVAA 519  Pomacea canali...
XP_004347396 705 DLARLDTLMEGLAKSFESNppvtGAYKPKLGDLCGAKYSa--DGNWYRAKVTKVTGn-QIGVLFVDYGNSETTTPaNLAS 781  Capsaspora owc...
XP_002128402 711 AGSKLDTLMEKMRGCLIADpplpGSHQPRRGEFCVARFTe--DDMWYRARVEKVEKd-KLHVHYIDFGNKEIIPSnRVAS 787  vase tunicate
XP_004995343 676 SSAELEKVMQSLASSNGAGa---GAFKPKKGAMCAAQFTl--DNVWYRAKITDVSGs-NVTVQYIDFGNKETLPAkRCAP 749  Salpingoeca ro...
CCI40531     720 SSRTCATIEEKLGEFTRLNgvsgKPFEVRKNTICAALFTdesGQVWNRAKVESSLPdgKVRVRYIDYGNVDVLPVnRLRP 799  Albugo candida
Feature 1              
5M9O_A       104 LSPAFS 109  human
2WAC_A       102 LPPAFS 107  fruit fly
NP_494839    791 IPAGFA 796  Caenorhabditis elegans
EFX77404     778 IPAVYA 783  common water flea
KPM05620     687 MPLGNF 692  Sarcoptes scabiei
PVD28669     520 LPSAFR 525  Pomacea canaliculata
XP_004347396 782 LPAAFS 787  Capsaspora owczarzaki ATCC 30864
XP_002128402 788 LPGEYN 793  vase tunicate
XP_004995343 750 LPAGTS 755  Salpingoeca rosetta
CCI40531     800 LDSTVM 805  Albugo candida

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