Conserved Protein Domain Family
Tudor_TDRD7_rpt2

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cd20428: Tudor_TDRD7_rpt2 
second Tudor domain found in Tudor domain-containing protein 7 (TDRD7) and similar proteins
TDRD7, also called PCTAIRE2-binding protein, or Tudor repeat associator with PCTAIRE-2 (Trap), is a component of specific cytoplasmic RNA granules involved in post-transcriptional regulation of specific genes: probably acts by binding to specific mRNAs and regulating their translation. It is required for lens transparency during lens development, by regulating translation of genes such as CRYBB3 and HSPB1 in the developing lens. It is also essential for dynamic ribonucleoprotein (RNP) remodeling of chromatoid bodies during spermatogenesis. TDRD7 contains three Tudor domains. The model corresponds to the second one. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.
Statistics
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PSSM-Id: 410499
Aligned: 8 rows
Threshold Bit Score: 265.847
Created: 27-Oct-2006
Updated: 25-Oct-2021
Structure
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Aligned Rows:
 
putative
Feature 1:putative peptide binding site [polypeptide binding site]
Evidence:
  • Comment:based on the structures of other Tudor-like family proteins with bound methylated/dimethylated peptides
  • Comment:In general, the Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                      #    #             
Q8NHU6        653 YTNVKVTNICSDGTLYCQVPCKGlnKLSDLLRKIEDYFhckhmTSECFVSLPFCGKICLFHCKGKWLRVEITNVHSsRAL 732  human
Q6NU04        634 FSNVTVTNVCSDGTLFCQVPSKGlaKLYETLQKVDGEFqfqqvTSHLYVSLPFCGKICLYHYKGKWARVEITNVHSsRAL 713  African clawe...
A6NAF9        659 YTNVCVTNVCSDGSVYCQLPSRGqaKLKDIMDKIEAHFis-qlTWELLVSRPFCGKVCLAKYKGKWARAEIINLHGsHVL 737  zebrafish
E7FDW8        637 YMNVSVTSVCSDGTIYCQVPSRGltKLNEILEKTENYFhs-qvTSESLVSRPFCGKNCLARYKGKWSRVEITNLHGsRVL 715  zebrafish
E1C3S7        640 YTNVRVTSILSDGNMYCQLPSEGlsKLSEVLQKIEYYLlh-qeTSEFNVSQPYCGKICLFLCKGKWTRVEITIIHSrRAL 718  chicken
XP_014345379  663 YTNVKITNVCSDGTVYCQIPSKGlrKLNDGLDKIDQFFgtrqiTSEFFVSIPFCGKYCLFNYKGKWTRIEITSVHSsRAL 742  coelacanth
XP_007897201  710 YLNVVVTNVCSDGTIYCQVPSKGwnRLNALLDKVEYYFnsrqiTSEYFVSLPFCGKRCLARSRGKWARVEITNVHGtRVV 789  elephant shark
XP_028911646  639 YENVRVTNINADGILFLQVPCQGlsKLNTIMNKLEIHLkdermSAKYFISLPFCGKICLLVNKRKMYRVEITNTHKtQAV 718  platypus
Feature 1            #  # #                                                   
Q8NHU6        733 DVQFLDSGTVTSVKVSELREIPPRFLqemiaIPPQAIKCCLADLPQSIGMWTPDAVLWLR 792  human
Q6NU04        714 DVHFLDSGTIASVKVSELKEIPPPLLrdlisIPPQALKCCLADLPLNIGMWTPDAVLWLR 773  African clawed frog
A6NAF9        738 DILFLDLGLPASLEVSELREIPPIFLkelitIPPQAIKCLLEDLNVDRAVWPPEAVLWLR 797  zebrafish
E7FDW8        716 DILFVDVGVQASVEVIELREIPPPLLrdlisTPAQALKCCLAGLPVSVGLWTPDAVQWLR 775  zebrafish
E1C3S7        719 GVRFIDTGRVAYVKVTDLREIPSQFLrevikIPPQAIKCCLADLPPDTGMWTPEAVLWLR 778  chicken
XP_014345379  743 DVQFVDTGTVASVKVSDLREIPSQFLremiaIPPQALKCCLADLPFNIGMWTPDAVLWLR 802  coelacanth
XP_007897201  790 DVMFLDTGTVASVAVSELREIPSPFLqesvsIPPQAIKCCLADLTFNIGMWTPDAVLWLR 849  elephant shark
XP_028911646  719 DVHFLDTGKVASVLVTDLRDIPELFVreliqIPPQALKCCLSDIKLTNKMWTEEAVTWLK 778  platypus

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