Conserved Protein Domain Family
Tudor_TDRD7_rpt1

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cd20427: Tudor_TDRD7_rpt1 
first Tudor domain found in Tudor domain-containing protein 7 (TDRD7) and similar proteins
TDRD7, also called PCTAIRE2-binding protein, or Tudor repeat associator with PCTAIRE-2 (Trap), is a component of specific cytoplasmic RNA granules involved in post-transcriptional regulation of specific genes: probably acts by binding to specific mRNAs and regulating their translation. It is required for lens transparency during lens development, by regulating translation of genes such as CRYBB3 and HSPB1 in the developing lens. It is also essential for dynamic ribonucleoprotein (RNP) remodeling of chromatoid bodies during spermatogenesis. TDRD7 contains three Tudor domains. The model corresponds to the first one. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.
Statistics
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PSSM-Id: 410498
Aligned: 7 rows
Threshold Bit Score: 179.546
Created: 27-Oct-2006
Updated: 25-Oct-2021
Structure
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Aligned Rows:
 
putative
Feature 1:putative peptide binding site [polypeptide binding site]
Evidence:
  • Comment:based on the structures of other Tudor-like family proteins with bound methylated/dimethylated peptides
  • Comment:In general, the Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                          #      #               #  # #                  
Q8NHU6        492 ELMEDEMKEYYSKNpkitp-vqavNVGQLLAVNAEEd-AWLRAQVISTEeNKIKVCYVDYGFSENVEksKAYKLNPKFCs 569  human
Q6NU04        474 ERMEDELKDFCSKSstaq--vrplRVGQLVAAKAEEd-AWLRAQISAIEdKKIKVCYVDYGFSETVDitKVCKLGKPFYt 550  African clawe...
A6NAF9        498 EVMEEEMQNFYNNIgaglc-llspKIGQLVAVASSDg-AMLRAQVHQLSeDKVKVYFLDHGFFDLVSrkTLFQLRDQFMt 575  zebrafish
E7FDW8        475 EKLEDEMREFYRQDntkma-lrspSPGQLTAVGAEEedDIIRAQVCEVMaDKVKVYYVDHGFSEVISirKLFELNEKFYr 553  zebrafish
NP_001292033  495 EQMEDKMKAYYSKNstasq-itfpSVGQLVAVHTEEe-AWLRAQIISVEdKRLKVYCVDHGFSEVIEssRVCKLHKQFCs 572  chicken
XP_007897201  548 EQIEDAMKEHFTNSdnpmvplnsqSVGQLVAVSAEEd-SWLRAQIVEVEaTKVKVFFVDHGFNEIVDrmKLHKLDGKFCs 626  elephant shark
XP_014345378  543 ELMEDKMKDYYKSSvatp--tqtvSVDKLVAVKAEEd-AWLRAQVIAVEgERVKVCYIDYGFNEIVEknKLRNLERQFYs 619  coelacanth
Feature 1                             
Q8NHU6        570 LSFQATKCKLAGLEVLSDDP 589  human
Q6NU04        551 LPFQATKCRLAGLEAFCDDS 570  African clawed frog
A6NAF9        576 LPFQATTCQLAGLEPFSTDP 595  zebrafish
E7FDW8        554 LPFQATKCKLAGLESFSQEQ 573  zebrafish
NP_001292033  573 LPFQVAKCKLAGLEVFSDDP 592  chicken
XP_007897201  627 LPFQAAKCKLAGLEPFCKEP 646  elephant shark
XP_014345378  620 LSFQATKCKLAGLESFSDDP 639  coelacanth

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