Conserved Protein Domain Family
Tudor_TDRD6_rpt7

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cd20426: Tudor_TDRD6_rpt7 
seventh Tudor domain found in Tudor domain-containing protein 6 (TDRD6) and similar proteins
TDRD6, also called antigen NY-CO-45 or cancer/testis antigen 41.2 (CT41.2), is a testis-specific expressed protein that was localized to the chromatoid bodies in germ cells, and is involved in spermiogenesis, chromatoid body formation, and for proper precursor and mature miRNA expression. Mutations in TDRD6 may be associated with human male infertility and early embryonic lethality. TDRD6 contains seven Tudor domains. This model corresponds to the seventh one. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.
Statistics
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PSSM-Id: 410497
Aligned: 4 rows
Threshold Bit Score: 255.887
Created: 30-Mar-2007
Updated: 25-Oct-2021
Structure
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Aligned Rows:
 
putative
Feature 1:putative peptide binding site [polypeptide binding site]
Evidence:
  • Comment:based on the structures of other Tudor-like family proteins with bound methylated/dimethylated peptides
  • Comment:In general, the Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                  #      #               
O60522       1521 IRAYATVIDGPEYFWCQFadTEKLQCLEVEVQTAgeqvadrrncipcPYIGDPCIVRYreDGHYYRALITNIceDYLVSV 1600 human
BAD51732     1576 VEAFASAVDSPEHFWCQLa-TANVDSLAVKVQEAgehsihdgrfsaeIEVGSPCNVIYsdDNYWYRAAVTKMk-DDKVTV 1653 African clawe...
XP_007895293 1812 IEGYVTAAESPSYFWCQYs-ASEIQMLAEKMQELgkredt-gtklssISVGDSCFCKYseDEQFYRAEVKKTn-SNILSL 1888 elephant shark
XP_014348589 1534 CQAYAIAVDGPDYFWCQFanSDGIEYLTEKTEEVgrlakvnenfatsVQCGDACILKYkkDNRWYRAIIKGIn-DNLLSI 1612 coelacanth
Feature 1          #  # #                                                        
O60522       1601 RLVDFGNIEDCvdpKALWAIPSELLSVPMQAFPCCLSGFNiSEGLCSQEGNDYFYEIITEDVL 1663 human
BAD51732     1654 RFVDYGNEETLq-mEQVRRLPADIAAIPVQAFPCSLANFNlSEGCWSSEANTFFYDKVTEGLL 1715 African clawed frog
XP_007895293 1889 NYVDYGNEEDVe-rEQVRKLPEELLKIPVQAFPCCLSGYDlSEGSWKDGAVGDFLHLLSDQLL 1950 elephant shark
XP_014348589 1613 RFVDYGNEDEVs-rEQIRPISSELLKIPVQAFPCSLAGFEfSTGFWDDSASEKFYEIVTEDVL 1674 coelacanth

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