2GF7,2XDP,4UC4,5VAR,2GFA,2QQR,5D6W,2QQS


Conserved Protein Domain Family
Tudor_JMJD2_rpt1

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cd20391: Tudor_JMJD2_rpt1 
first Tudor domain found in Jumonji domain-containing protein 2 (JMJD2) family of histone demethylases
JMJD2 proteins, also called lysine-specific demethylase 4 histone demethylases (KDM4), have been implicated in various cellular processes including DNA damage response, transcription, cell cycle regulation, cellular differentiation, senescence, and carcinogenesis. They selectively catalyze the demethylation of di- and trimethylated H3K9 and H3K36. This model contains only three JMJD2 proteins, JMJD2A-C, which all contain jmjN and jmjC domains in the N-terminal region, followed by a canonical PHD domain, a noncanonical extended PHD domain, and tandem Tudor domains. The model corresponds to the first Tudor domain. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions. JMJD2D is not included in this model, since it lacks both the PHD and Tudor domains and has a different substrate specificity. JMJD2A-C are required for efficient cancer cell growth.
Statistics
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PSSM-Id: 410462
Aligned: 33 rows
Threshold Bit Score: 67.6161
Created: 30-Mar-2007
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
peptide binding
Conserved site includes 7 residues -Click on image for an interactive view with Cn3D
Feature 1:peptide binding site [polypeptide binding site]
Evidence:
  • Structure:2QQS; Homo sapiens JMJD2A in complex with Histone H4K20me3 peptide, contacts at 4A
    View structure with Cn3D
  • Structure:5VAR; Homo sapiens JMJD2A in complex with a tri-methyl lysine competitive inhibitor, contacts at 4A
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                           ## #### #            
2GF7_A          7 ITAGQKVISKHKNg-RFYQCEVVRLt-tETFYEVNFDDGSFSDNLYPEDIVSQDC 59   human
2QQS_A          6 ITAGQKVISKHKNg-RFYQCEVVRLt-tETFYEVNFDDGSFSDNLYPEDIVSQDC 58   human
OXU30586     1339 IRQGEVVYAKHKNt-RYYHADVLSVs-dKICFLVVFKDESFSNDLPPEDVVDYKP 1391 Trichomalopsis sarcophagae
XP_012554472  734 VVEGDFVLAKHKNg-RYYKAKVLETs-mVLYYKVVFEDKSFCFDLPPGDIKSVNA 786  Hydra vulgaris
PAA65735      720 IKTGDRVVAKHKNg-RYYPGQVVQRv-sAQQFSVDFQDGSFSEDVPRSSFIDVAE 772  Macrostomum lignano
EFX83215      523 ASVGQQVYAKHPEsgEYHLADVTDNtqtVTYYSVDFNDGTNSQDTYPEDIKNYNC 577  common water flea
CDS37276      879 LQPGDMVYALHPGngRYYKAVAVKLt-gPQLCKVVFPDGTFSRDTPSNYIVGHDW 932  Echinococcus multilocularis
OQR70688      758 LQSGCQVYAKHKNg-RYYSGVLKNFf-yHTYHSVHFHDGSTTHDLNINFIFVKRY 810  Tropilaelaps mercedesae
XP_015784456  894 VNLGTIVLAKHKNr-RYYEATVMNKt-sLILHHAHLEDNSILQILKTSDIVDPDI 946  two-spotted spider mite
XP_022906422 1737 FKPATKVWAKKHGngRFYKAEVLNHrltKTFGFYVVKDGSFVSDVLAENVVSKPL 1791 Onthophagus taurus

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