6BHH,5KH6,6BHD,5KCH,3DLM


Conserved Protein Domain Family
Tudor_SETDB1_rpt1

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cd20382: Tudor_SETDB1_rpt1 
first Tudor domain found in SET domain bifurcated 1 (SETDB1) and similar proteins
SETDB1, also called ERG-associated protein with SET domain (ESET), histone H3-K9 methyltransferase 4, H3-K9-HMTase 4, or lysine N-methyltransferase 1E (KMT1E), acts as a histone-lysine N-methyltransferase that specifically trimethylates 'Lys-9' of histone H3 (H3K9me3). It mainly functions in euchromatin regions, thereby playing a central role in the silencing of euchromatic genes. It contains two Tudor domains. This model corresponds to the first one. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.
Statistics
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PSSM-Id: 410453
Aligned: 22 rows
Threshold Bit Score: 129.324
Created: 25-Jan-2019
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
peptide binding
Conserved site includes 5 residues -Click on image for an interactive view with Cn3D
Feature 1:peptide binding site [polypeptide binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                         #  ####                         
6BHH_A         89 VGSRVVAKYkd-----------gnQVWLYAGIVAETPnv-kNKLRFLIFFDDGYASYVTQsELYPICRPlKKTWEDIedi 156  human
NP_611966     532 IGTRVIAYFdgttlsr-gkdkgvvQSAFYPGIIAEPLkq-aNRYRYLIFYDDGYTQYVPHrDVRLVCQAsEKVWEDVh-a 608  fruit fly
PAA93144      343 VGARVVSSYtdd----------rgLVFYYSAIVAEPPge-rNSRRYLLFFDDGYAQYVPPsDVRRVLQQtPQNWREVa-e 410  Macrostomum l...
XP_013401598  268 VGTRVVALYkdee--------atpSTSFYAGIVAEPPnv-rNNNRFLVFFDDGYAQYSQPkDVHKVYEQsKNVWEDIh-p 337  Lingula anatina
EKC38819      529 VGTRVVALYkde----------esMASFYAGIVAETPnq-rNAYRYLIFFDDGYAQYSRSdDIHKVLDQsTNVWDDIh-q 596  Pacific oyster
EFX64878      340 VGARVIAQYvedkd------gklkPSSYYAGVIAEAPkt-lNQYRYLVFFDDGYAQYCTHeQVTMVCQSsRDVWQDIh-m 411  common water ...
ELU15418      247 VGSRIIALYkee----------dgRPAFYSGIVAEPPsf-rNQYRYLVFFDDGYAQYSHSkDIHRVIVQyKKIIDDLp-l 314  Capitella teleta
KFM70573       87 VGTRIIAVCnlemdtlsarytdefKSHLYAGIVAEPPkv-tNRGRYLIFFDDGYAQYVYHeDVFVVLSQsNDVADDIh-e 164  Stegodyphus m...
PIK47035      168 IGQRVVALFree----------dgDDCLYAGVIAEMPmt-tNHGRYLVFFDDGYVQYMHRkRIHLVYQNsKNVWDDVe-e 235  Japanese sea ...
XP_026691811  244 AGSRVAANYk--------------TEGIYSGVVAEASdrkvNRNRYLIFFDDGYAMYCNPrHVYLVYGPqTNVWIYIshk 309  vase tunicate
Feature 1                       
6BHH_A        157 SCRDFIEEYVTAYP 170  human
NP_611966     609 ASRDFIQKYVEKYS 622  fruit fly
PAA93144      411 DSQDFVRAYLDRFP 424  Macrostomum lignano
XP_013401598  338 DSQEFIKDYLMAYP 351  Lingula anatina
EKC38819      597 DSQEFIKDYLKQYP 610  Pacific oyster
EFX64878      412 NSRSFVLNYLKQYP 425  common water flea
ELU15418      315 DTAEFIRGYIEQYP 328  Capitella teleta
KFM70573      165 DLRDFMRAYLAKYP 178  Stegodyphus mimosarum
PIK47035      236 LMSEFVKDYLEQYP 249  Japanese sea cucumber
XP_026691811  310 PTSDYIRDYLSTPE 323  vase tunicate

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