4UI9,2RT9


Conserved Protein Domain Family
BRcat_RBR_EMI

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cd20348: BRcat_RBR_EMI 
Click on image for an interactive view with Cn3D
BRcat domain found in early mitotic inhibitor (EMI) subfamily of F-box proteins
The EMI subfamily includes FBXO5 (EMI1) and FBXO43 (EMI2), which are anaphase-promoting-complex/cyclosome (APC/C) inhibitors that bind APC/C-CCD20 (Cell division cycle protein 20) and/or APC/C-CDH1 (CDC20 homolog 1) complexes. FBXO5, also called FBX5, or early mitotic inhibitor 1 (EMI1), acts as a regulator that inhibits the anaphase-promoting complex/cyclosome (APC/C), which controls cell cycle progression through the sequential degradation of various substrates from S phase to early mitosis. During the mitotic cell cycle, it plays a role as both substrate and inhibitor of the APC-FZR1 complex. During G1 phase, it plays a role as substrate of the APC-FZR1 complex E3 ligase. FBXO43, also called FBX43, or endogenous meiotic inhibitor 2 (EMI2), plays a key role during the meiotic cell cycle. It is required to establish and maintain the arrest of oocytes at the second meiotic metaphase until fertilization. It probably acts by inhibiting the APC/C ubiquitin ligase. It may recognize and bind to some phosphorylated proteins and promote their ubiquitination and degradation. Both FBXO5 and FBXO43 contain an F-box domain, and the first half of the RBR domain that was previously known as RING-BetweenRING-RING domain or TRIAD [two RING fingers and a DRIL (double RING finger linked)] domain. Based on current understanding of the structural biology of RBR ligases, the nomenclature of RBR has been changed to RING1-BRcat (benign-catalytic)-Rcat (required-for-catalysis) recently. The RBR domain uses an auto-inhibitory mechanism to modulate ubiquitination activity, as well as a hybrid mechanism that combines aspects from both RING and HECT E3 ligase functions to facilitate the ubiquitination reaction. This model corresponds to the BRcat domain of the EMI subfamily that adopts the same fold as the Rcat domain while lacking the catalytic cysteine residue and ubiquitination activity.
Statistics
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PSSM-Id: 439009
Aligned: 31 rows
Threshold Bit Score: 59.2921
Created: 6-Dec-2018
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
Zn binding site
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C C C C H CClick to see conserved feature residue pattern help
Evidence:
  • Structure:4UI9; Homo sapiens FBX5 binds two Zn2+ ions.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              #  #                 #      #    #  #    #     #   
4UI9_S       372 NESLKACIrCNSPAKYDc---yLQRATCKr--eGCGFDYCTKCLCNyHTtk-dCSDG 422 human
XP_002415908 212 GEWQLPCPrCRYPSRVSs---gAACAICKs--pNCHYRFCKHCKSPaHEsgqrCPQL 263 black-legged tick
PAA52573     312 NQGLRPCPrCRWPARVDp---dTRIGRCTrpetECGFAFCLNCLTDgHLyr-hCPFL 364 Macrostomum lignano
PSN40828     347 GKTLLPCPrCSLPSQVDn---dTHSGLCTr--eGCKFHYCTKCKCQfHGne-qCSIS 397 German cockroach
XP_014668325 322 EQELKPCPrCNSPSAVVk---vMEKGSCTn--iTCMFVFCTKCRLEfHSsk-aCAVG 372 Priapulus caudatus
PBC34864     320 WEHLLPCPkCSFPCHVDg---eKNVGTCSr--qGCSMEFCTSCSSRpHTg--pCKTP 369 Apis cerana cerana
XP_014287716 350 DEILMACPsCSLPSTCSp---sTRLGRCSr--iSCGMEFCCSCRSPyHGhr-pCTTS 400 brown marmorated stink bug
CBY22410     249 GDFISKCPfCSHPCRRTpr-ekKNRGICYn--sDCGREFCGSCRRQ-HAagdiCSVS 301 Oikopleura dioica
KOB79378     286 SRAQAPCVrCNGPAKVTaetsgEVWAECKs--gTCSYQFCKDCSCDrHPgk-cCSQY 339 winter moth
OWR53683     353 SRNQLCCIrCQYPAKITennsgEKLVECTs--sTCGYQFCGLCKYGpHPgk-sCNTY 406 Danaus plexippus plexippus

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