Conserved Protein Domain Family
JBP

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cd20332: JBP 
J-binding protein
J binding protein (JBP) 1 and JBP2 catalyze the first step of base J biosynthesis: the hydroxylation of thymine in DNA to form 5-hydroxymethyluracil (hmU). Base J (beta-d-glucopyranosyloxymethyluracil) is a hyper-modified DNA base found in the DNA of kinetoplastids (Trypanosoma brucei, Trypanosoma cruzi, and Leishmania). JBP1 and JBP2 each contain a J-DNA binding domain and this oxygenase domain. They belong to the TET/JBP family of dioxygenases that require Fe2+ and alpha-ketoglutarate (also known as 2-oxoglutarate) for activity.
Statistics
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PSSM-Id: 380678
Aligned: 8 rows
Threshold Bit Score: 410.249
Created: 14-May-2019
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Feature 1:putative chemical substrate binding site [chemical binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                      
B6EU02     241 TEETMVDLTGee--------tVDAVHSFQaeyltld-glelvtKAAIFYDReg-------------------------eg 286  Leishmania taren...
Q4QHM7      22 RTPEEVAESYaeavk--shpfYDNVHSVIdf-----------yDSGTIKDGr---------------------------- 60   Leishmania major
EPY32214    19 TGMEEVDATKhpvt---eyldEDNFELIN--------------DSGPHFVFeg-------------------------de 56   Strigomonas culicis
P86938      45 AEAREKAEKAfqeav-kkhpfHNNADHTVd-------------FHGTTVFRna--------------------------k 84   Trypanosoma bruc...
CUF37679   195 MSDDEIDGTEh---------vDDGAEQMTparflkeidfeivnKSGIFFEDpsn------------------------ek 241  Bodo saltans
Q57X81     195 PFPRNAAEAAvniapvaldavDDIYEGFD--------------VTGTEVVDiptgkvseylsekdfelvtedsvlldptg 260  Trypanosoma bruc...
KNH08884   167 TTREIKLGTPypy------tyESNYEKIIt-------------ENYRIMDG----------------------------- 198  Perkinsela sp. C...
CUG87831    28 AEMKEAYDAAvlt-----hpfVDMAEYRLev-----------sDNAVFSDGe---------------------------- 63   Bodo saltans
Feature 1                                                  #                                   
B6EU02     287 QRIVAVYIPGGVPEdTCRAAAAVLEPAATKKNLRALt-nGGLPPDTGLVGYYDYLTNPTRHKCRETEFSRRNWGLLa-QS 364  Leishmania taren...
Q4QHM7      61 GQIIGVVLREALPKyAVSMASELLASAAVRTSLRSMm-fGGESPLSGIAGYFDYRGSPVELKSRKTSFTYEHEAAWp-AV 138  Leishmania major
EPY32214    57 MRLVAVFIKNGVNTaVCRKAAAVLEPAATKENLRMKt-nGGIPPNTGIVGYYDYLTNPTQHKCRETEFMRKNWHDIndGC 135  Strigomonas culicis
P86938      85 GKVCGVLIPKALPSfATSMAADVLECAVARTSLRSAl-fGGVSPNSGIAGYFDYRGTPVELKCRKTSFTYEHTKEWr-SV 162  Trypanosoma bruc...
CUF37679   242 GPLAAIYLKGALSShLCGSASAVLEHAATTRNLRKMl-nGGTPPHTGIVGFYDYVNNASSRKCRETQFTRRNWPEIanDV 320  Bodo saltans
Q57X81     261 KRVQAIFIRGGIDKdICRRAAADVEGVATKQNMRRLtngGVRNPDTGILGYYDYLNNPTKRKCRMTEFTRRNWGKIigPC 340  Trypanosoma bruc...
KNH08884   199 EETLVVFVKNAVPHkIRAAASQVLAPAATATDNRRLv-nSGLPPNSGIVGYYDYLNTPHSEKCRLTAFSRANESSMp-TI 276  Perkinsela sp. C...
CUG87831    64 GNVVGMLIRKGIPAkAAEMASDVLRTAASRTSLRASi-fGGEPPLSGIAGYYDYSGSPVELKCRKTSFTCEVIQQWp-NV 141  Bodo saltans
Feature 1                                             #            #  #                        
B6EU02     365 EPLLKHLDKLYSQLAPMHHHLQKVAIPsqyqLCGTVFSTITVNRNFRTAVHTDKGDFrsGLGVLSVINGEFEGCHlaikk 444  Leishmania taren...
Q4QHM7     139 FPVVDYVSELYRHVAPERWKAQNDAIPdvvrIHGTPFSTLTINSRFRTASHTDVGDFdgGYSCIACLDGHFKGLAlafdd 218  Leishmania major
EPY32214   136 GALLHALDFVYRQYAPIHYNMQKIAIPsnfqLLDTVFSTITVNRNFRTAVHTDKGDFksGFAVLSVINGTYDGCHlaikk 215  Strigomonas culicis
P86938     163 FPMIDYTSAIYKAALPDHWKAQDAAVPdvvrIHGSPFSTLTVNERFRTASHTDNGDFdnGYGVLAVLKGEYSGLSlaldd 242  Trypanosoma bruc...
CUF37679   321 TPLLQRLDAIYREYAPLHYKQQKSSIPerfqLFGTAFSTLTVNRNFRTAAHADRGDFksGLGIVAVLDGEYEGCHlaipa 400  Bodo saltans
Q57X81     341 GELLQLLDQLYKENAPDHYELQRRVIPpeymLFNTVFSTVSVNKNFRTAVHRDKGDFrgGLTALCVLDGNYEGCYlalks 420  Trypanosoma bruc...
KNH08884   277 APFVRTLEKVYQTHAEKHHRLQNTVIPppvrLFDTVFSTLTVNDTFRTALHTDSGDFkkGLGIVTVLDGDYEGVFlampr 356  Perkinsela sp. C...
CUG87831   142 FPLVEYVSSLYKAAAPVEWNAQNNAIPdivrVNDSPFSTLTINQRFRTARHTDAGDFdaGHGVLAVLEGDFEGLHlgltd 221  Bodo saltans
Feature 1                                              # # #           
B6EU02     445 lkKAFQLKVGDVLLFDTSLEHGNTEVInpe--ihWQRTSIVCYLRTGLMSSVCEME 498  Leishmania tarentolae
Q4QHM7     219 fgINVLMQPRDVMIFDSHHFHSNTEVElsfsgedWKRLTCVFYYRAALGEPASYAE 274  Leishmania major
EPY32214   216 lrKSFKMGVGDVLLFDASLEHGNTQVHnpd--fcWNRTSVVCYLRNGLCSAVCEME 269  Strigomonas culicis
P86938     243 ygVCFNMQPTDVLLFDTHLFHSNTELEakeanatWNRLSCVFYYRAALGEQPCVEE 298  Trypanosoma brucei brucei TREU927
CUF37679   401 inRAFDLKPGDVLLFNTSLEHGNTEVHspa--dmWTRLSIVAYFRTGLVSQACIEQ 454  Bodo saltans
Q57X81     421 arKAFCLQVGDVLFFDSSLEHGNTEVHnre--gsWRRISIVCYLRCGLMSHTCETE 474  Trypanosoma brucei TREU927
KNH08884   357 leAAFDIRPGDVLLFNTDLLHGNTEPRce----kWNRLAVVAYLRTNLFASQCMEV 408  Perkinsela sp. CCAP 1560/4
CUG87831   222 frVCFHMQPRDVLIFNTHHFHANTELEkhgknldWNRLTCVFYYRASLGEPNCLNH 277  Bodo saltans

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