Conserved Protein Domain Family
DSRM_DND1

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cd20313: DSRM_DND1 
double-stranded RNA binding motif of dead end protein homolog 1 (DND1) and similar proteins
DND1 (also known as dead end protein, or RNA-binding motif single-stranded-interacting protein 4 (RBMS4)) is an RNA-binding protein that is required for the survival of primordial germ cells (PGCs) and suppresses the formation of germ-cell tumors. DND1 binds a UU(A/U) trinucleotide motif predominantly in the 3' untranslated regions of mRNA, and destabilizes target mRNAs. It also counteracts the function of several microRNAs (miRNAs), which are inhibitors of gene expression, by binding mRNAs and prohibiting miRNAs from associating with their target sites. DND1 contains two RNA recognition motifs (RRMs) and a C-terminal double-stranded RNA binding motif (DSRM) that is not sequence specific, but highly specific for dsRNAs of various origin and structure.
Statistics
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PSSM-Id: 380745
Aligned: 11 rows
Threshold Bit Score: 110.459
Created: 29-Apr-2019
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative RNA
Feature 1:putative RNA binding site [nucleic acid binding site]
Evidence:
  • Comment:Based on structure evidence that Homo sapiens TARBP2 (5N8L) binds siRNA.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        # ##  ##  ##    ##              # #                            ###  ##          
Q8IYX4       254 GARATLQLLCQRMKLGSPVFLTKCLgigpagwHRFWYQVVIPGhpvPFSGLIWVVLTLDgr-dGHEVAKDAVSVRLLQAL 332 human
XP_023685152 287 DAVALLRKVCDMLDLGPPLYSTQYLcsspegfLCFAFRVLIPGvplPYTGMTRVLPGCSga-aQREEVYHAAAEHILRSL 365 Paramormyrops k...
XP_008324622 318 ERAMRLHKLCKLLDVVKPRCDVILChaavdgfLHFNYKVHIPMvtaPFTGRVMVLPGPCai-sVLEDARQAAVQQVMQKF 396 tongue sole
AJC64506     316 DAVHTFNQLCISCQFGSPWYDMQLLrtgpdgyQYFHVKVFIPGlplPFEGVVKILAGCLa--tVQEEVKMAAASQILKAL 393 Chinese sturgeon
XP_019742143 287 SPVTFLQKCCEMSGIGLPQFEFFCSgdgpdefLHLTFMVSILGl-gVFPGEVRILPGPTat-tTIERAREAAAQQLLKSV 364 tiger tail seah...
XP_007900157 289 DAIQLLNEYCLKRRWGSPICSIHLLrss-cydHSYLFKVLIPGlpaYFNGTVNVMLYDLv--aNRDLPKQKAAQEVLQHL 365 elephant shark
PKU39653     252 DALDRLNALCQRQCLGTPLFLTKCIqanpngwLRFWCRVVIPGcpvPFNGFTWVRPDGPgr-sGHEEAKVAMALQVLRVL 330 Limosa lapponic...
XP_014353589 319 NEVAQLNTFCFKKRLGIPAYVIQSCgirlegrELFDFQVSIPGfsiPFRGSMWVSAENLm--nGQEEVKRSAAQQILIYL 396 Latimeria chalu...
XP_019390319 259 SMLDYLSALCKKQQLGEPVYLTKCVqvnpdgwMRFWYQVVIPGypsPFSGFIWIKPEQSgl-sEHEKAKNAAAFQVLKTL 337 Crocodylus porosus
Q6DCB7       275 SAVGCLNMLCQEMKLGRPVFLIKLFsvtsfgwIRFWYQVVIPTyptPFCGYAWMIGENLelneKYEHARQVVAMKILSAL 354 African clawed ...
NP_997960    324 DAVSHLQWMCEVNRLGSPQYEVHFHhaapdgfLYFAFKVLIPGlplPLYGFVQILPGTSar-aMKSEVYRAAAEQVIQTL 402 zebrafish
Feature 1         
Q8IYX4       333 S 333 human
XP_023685152 366 Y 366 Paramormyrops kingsleyae
XP_008324622 397 F 397 tongue sole
AJC64506     394 S 394 Chinese sturgeon
XP_019742143 365 I 365 tiger tail seahorse
XP_007900157 366 G 366 elephant shark
PKU39653     331 G 331 Limosa lapponica baueri
XP_014353589 397 G 397 Latimeria chalumnae
XP_019390319 338 G 338 Crocodylus porosus
Q6DCB7       355 G 355 African clawed frog
NP_997960    403 C 403 zebrafish

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