1TQ5,1J1L,2VEC


Conserved Protein Domain Family
cupin_pirin-like_N

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cd20287: cupin_pirin-like_N 
pirin-like, N-terminal cupin domain
This family contains the N-terminal cupin domain of pirin and pirin-like proteins, including Escherichia coli YhhW and YhaK. Pirin functions as both a transcriptional cofactor and an apoptosis-related protein in mammals and is involved in seed germination and seedling development in plants. Proteins in this family have two tandem cupin-like folds but the C-terminal cupin fold has diverged considerably and does not have a metal binding site. The exact functions of pirins are unknown but they have quercitinase activity in Escherichia coli and are thought to play important roles in transcription and apoptosis. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold.
Statistics
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PSSM-Id: 380421
Aligned: 3 rows
Threshold Bit Score: 135.413
Created: 26-Apr-2019
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
metal binding
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1: metal binding site [ion binding site], 4 residue positions
Conserved feature residue pattern:H H H EClick to see conserved feature residue pattern help
Evidence:
  • Comment:The four-coordinate metallocenter usually includes three histidines and one glutamate; however, this protein may bind metal via different amino acids
  • Structure:1J1L: Homo sapiens pirin binds iron; contacts at 4.0A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                      # #                                          # #               
1TQ5_A     40 LRVINDDVIEagqGFGTHPHKDxEILTYVLeg-tVEHQDsxgNKEQVPagEFQIXSAgtgIRHSEYNpssterLHLYQIW 118 Escherichia coli
1J1L_A     39 FLLFDEFKGGrpgGFPDHPHRGfETVSYLLeggsXAHEDfcgHTGKXNpgDLQWXTAgrgILHAEXPcse-epAHGLQLW 117 Homo sapiens
2VEC_A     63 LRVLNQEVLApgaAFQPRTYPKvDILNVILdg-eAEYRDsegNHVQASagEALLLSTqpgVSYSEHNlskdkpLTRMQLW 141 Escherichia coli
Feature 1       
1TQ5_A    119 IX 120 Escherichia coli
1J1L_A    118 VN 119 Homo sapiens
2VEC_A    142 LD 143 Escherichia coli

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