Conserved Protein Domain Family
T-box_TBR1

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cd20204: T-box_TBR1 
DNA-binding domain of T-box brain protein 1 and related T-box proteins
TBR1 (also known as T-brain-1 or TES-56) is a neuron-specific transcription factor of the T-box family and involved in forebrain development. It has been recognized as a high-confidence risk gene for autism spectrum disorders (ASD); it regulates the expression of ASD-related genes that are critical for cortical development. This subfamily belongs to the T-box family of transcription factors which play a multitude of diverse functions throughout development. The founding member of the T-box family is Brachyury (also known as TBXT, or T). T-box family members share a conserved DNA-binding domain (T-box) which binds DNA in a sequence-specific manner. Common features shared by T-box family members are DNA-binding and transcriptional regulatory activity, a role in development, and conserved expression patterns.
Statistics
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PSSM-Id: 410330
Aligned: 6 rows
Threshold Bit Score: 418.754
Created: 8-Mar-2019
Updated: 25-Oct-2021
Structure
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Aligned Rows:
 
DNA bindinghomodimer
Feature 1:DNA binding site [nucleic acid binding site]
Evidence:
  • Comment:based on the structure of mouse TBX21 bound to DNA; TBX21 T-box monomers dimerize upon DNA binding forming a tight dimer

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                    ##                                # #               
Q16650       203 KAQVYLCNRPLWLKFHRHQTEMIITKQGRRMFPFLSFNISGLDPTAHYNIFVDVILADPNHWRFQGGKWVPCGKADTNVQ 282 human
GCF49312     290 KAQVYLCNRPLWLKFHRHQTEMIITKQGRRMFPFLSFNISGLDPTAHYNIFVDVILADPNHWRFQGGKWVPCGKADTNVQ 369 Paroedura picta
AAI36087     146 KAQVYLCNRPLWLKFHRHQTEMIITKQGRRMFPFLSFNISGLDPTAHYNIFVDVILADPNHWRFQGGKWVPCGKADTNVQ 225 Xenopus tropicalis
XP_006010469 201 KAQVYLCNRPLWLKFHRHQTEMIITKQGRRMFPFLSFNISGLDPTAHYNIFVDVILADPNHWRFQGGKWVPCGKADTNVQ 280 coelacanth
XP_007888387 201 KAQVYLCNRPLWLKFHRHQTEMIITKQGRRMFPFLSFNISGLDPTAHYNIFVDIILADPNHWRFQGGKWVPCGKADTNVQ 280 elephant shark
NP_001108562 200 KAQVYLCNRALWLKFHRHQTEMIITKQGRRMFPFLSFNISGLDPTAHYNIFVDVILADPNHWRFQGGKWVPCGKADTNVT 279 zebrafish
Feature 1                                   #  #               ##                                
Q16650       283 GNRVYMHPDSPNTGAHWMRQEISFGKLKLTNNKGASNNNGQMVVLQSLHKYQPRLHVVEVNEDGTEDTsQPGRVQTFTFP 362 human
GCF49312     370 GNRVYMHPDSPNTGAHWMRQEISFGKLKLTNNKGASNNNGQMVVLQSLHKYQPRLHVVEVNEDGTEDTsQPGRVQTFTFP 449 Paroedura picta
AAI36087     226 GNRVYMHPDSPNTGAHWMRQEISFGKMKLTNNKGASNNNGQMVVLQSLHKYQPRLHVVEVNEDGTEDTsQPGRVQTFTFP 305 Xenopus tropicalis
XP_006010469 281 GNRVYMHPDSPNTGAHWMRQEISFGKLKLTNNKGASNNTGQMVVLQSLHKYQPRLHVVEVNEDGTEDSsQPGRVQTYTFP 360 coelacanth
XP_007888387 281 GNRIYMHPDSPNTGAHWMRQEISFGKLKLTNNKGASNNNGQMVVLQSLHKYQPRLHVVEVNEDGAEDTnQPSRVQTFSFP 360 elephant shark
NP_001108562 280 GNRVYMHPDSPNTGAHWMRQEISFGKLKLTNNKGATNNTGQMVVLQSLHKYQPRLHVVQVNEDGTEDTsQPGRVQTFTFP 359 zebrafish
Feature 1               # #     #  #   ###  ##  
Q16650       363 ETQFIAVTAYQNTDITQLKIDHNPFAKGFRD 393 human
GCF49312     450 ETQFIAVTAYQNTDITQLKIDHNPFAKGFRD 480 Paroedura picta
AAI36087     306 ETQFIAVTAYQNTDITQLKIDHNPFAKGFRD 336 Xenopus tropicalis
XP_006010469 361 ETQFIAVTAYQNTDITQLKIDHNPFAKGFRD 391 coelacanth
XP_007888387 361 ETQFIAVTAYQNTDITQLKIDHNPFAKGFRD 391 elephant shark
NP_001108562 360 ETQFIAVTAYQNTDITQLKIDHNPFAKGFRD 390 zebrafish

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