Conserved Protein Domain Family
T-box_TBX6

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cd20196: T-box_TBX6 
DNA-binding domain of T-box transcription factor 6, and related T-box proteins
TBX6 is a T-box transcription factor which plays an essential role in the fate determination of axial stem to become either neural or mesodermal. It also plays an essential role in the regulation of left/right patterning in mouse embryos, through effects on nodal cilia and perinodal signaling. This subfamily belongs to the T-box family of transcription factors which play a multitude of diverse functions throughout development. The founding member of the T-box family is Brachyury (also known as TBXT, or T). T-box family members share a conserved DNA-binding domain (T-box) which binds DNA in a sequence-specific manner. Common features shared by T-box family members are DNA-binding and transcriptional regulatory activity, a role in development, and conserved expression patterns.
Statistics
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PSSM-Id: 410322
Aligned: 4 rows
Threshold Bit Score: 353.789
Created: 8-Mar-2019
Updated: 25-Oct-2021
Structure
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Aligned Rows:
 
DNA binding
Feature 1:DNA binding site [nucleic acid binding site]
Evidence:
  • Comment:based on related T-box transcription factors bound with DNA
  • Comment:T-box monomers dimerize upon DNA binding; some form weak dimers, others tight dimers, some may bind as non-associating monomers where the dimer is kept in register by the DNA

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                ##                                #                  
O95947     91 VSLSLENRELWKEFSSVGTEMIITKaGRRMFPACRVSVTGLDPEARYLFLLDVIPVDgaRYRWQGRRWEPSGKAEprlPD 170 human
Q8AV66     96 VKMKLENKELWKQFHSIGTEMIITKsGRRMFPQCKVSVSGLEADGKYLLLADLLPVDnsRYKWQEDHWEASGRAEprlPE 175 African clawed frog
ETE67085   91 VRMSLENSELWKRFSGIGTEMIITKaGRRMFPQLKVSVTGLDPEAKYLLLVDVVPVGgsRYKWHGKKWEASGKAElppPD 170 king cobra
Q8JIS6     62 VRMELENAGLWKQFSTVGTEMIVTKkGRRMFPQLRVKLSGLNPSLRYILLLDIVPVDssRYRFQDNSWQVVGGAEarlPD 141 zebrafish
Feature 1                              #  #            ##                                    #
O95947    171 RVYIHPDSPATGAHWMRQPVSFHRVKLTNSTLDPHGHLILHSMHKYQPRIHLVRAAqlcsqhwgGMASFRFPETTFISVT 250 human
Q8AV66    176 RVYIHPDSPAPGSHWMKQPISFHKIKLTNNTLDQMGHIILHSMHKYQPRFHIVRAQdvfsrrwgGCSSFTFPETLFLTVT 255 African clawed frog
ETE67085  171 RVYIHPDSPASGAHWMRQPVSFHRLKLTNNTLDPHGHLIVHSMHRYQPRVHVVGAGgrrg-aggGCASFTFPETQFLTVT 249 king cobra
Q8JIS6    142 RVFIHPDSPATGEHWQNRTISFHRAKLTNNTLDAQGYIILHSLHRYQPRVHVIEARdvlm-wgrTQHSFTFPETQFITVT 220 zebrafish
Feature 1     ###    #  ##  #######  
O95947    251 AYQNPQITQLKIAANPFAKGFRE 273 human
Q8AV66    256 AYQNEKITQLKIQTNPFAKGFRE 278 African clawed frog
ETE67085  250 AYQNPQITQMKIESNPFAKGFRE 272 king cobra
Q8JIS6    221 AYQNNKITELKINSNPFAKGFRE 243 zebrafish

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