5VC8,6G3T


Conserved Protein Domain Family
PWWP_NSD_rpt1

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cd20144: PWWP_NSD_rpt1 
Click on image for an interactive view with Cn3D
first PWWP domain found in nuclear receptor-binding SET domain-containing (NSD) proteins
The nuclear receptor binding SET domain (NSD) protein family consists of three HMTases, NSD1, NSD2/MMSET/WHSC1, and NSD3/WHSC1L1 that are critical in maintaining the chromatin integrity. Reducing NSD activity through specific lysine-HMTase inhibitors appears promising in suppressing cancer growth. NSD proteins have specific mono- and dimethylase activities for H3K36, and play nonredundant roles during development. NSD1 plays a role in several pathologies, including but not limited to Sotos and Weaver syndromes, acute myeloid leukemia, breast cancer, neuroblastoma, and glioblastoma formation. NSD2 is involved in cancer cell proliferation, survival, and tumor growth, through mediating constitutive NF-kappaB signaling via the cytokine autocrine loop. NSD3 is amplified in human breast cancer cell lines. Moreover, translocation resulting in NUP98 fusion to NSD3 leads to the development of acute myeloid leukemia. NSD proteins contain a catalytic suppressor of variegation, enhancer of zeste and trithorax (SET) domain, two proline-tryptophan-tryptophan-proline (PWWP) domains, five plant homeodomain (PHD) fingers, and an NSD-specific Cys-His rich domain (C5HCH). This model corresponds to the first PWWP domain. This family also includes Drosophila melanogaster maternal-effect sterile 4 (dMes4) that may act as a histone-lysine N-methyltransferase required for wing morphogenesis. The PWWP domain specifically recognizes DNA and histone methylated lysines.
Statistics
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PSSM-Id: 438972
Aligned: 56 rows
Threshold Bit Score: 100.466
Created: 9-Jan-2019
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 5 residues -Click on image for an interactive view with Cn3D
Feature 1:DNA binding site [nucleic acid binding site]
Evidence:
  • Structure:5VC8; Homo sapiens NSD2 binds DNA, contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                         
5VC8_A         13 VGDLVWSKVSg-YPWWPCXVSADPl-lHSYTKLKgqk--------ksARQYHVQFFGdAPERAWIFekSLVAFEGeg--- 79   human
GBP05889       17 VADLAWARIGt-YPFWPCIVTRDPy-sDLYVKKKpsg-------rleRNFVHVTFFGdNGRRGWVSenMLRKFLGqlefe 87   Eumeta japonica
PNF15991      234 IGDLAWARVTg-YPFWPCMIVLDPe-qRIFTKTTvrg-------nftLRSLHVQFFGdNGRRSWLYsnCVIQFEGle--- 301  Cryptotermes ...
RZF33032      250 VGDLAWARIGn-HPFWPCIIARDPe-lGIFTRIRmftk-----slvpHRRLHVQFFGdNGRRSWLSstSVMNYKGra--- 319  small brown p...
KYQ49107      133 VGQLAWARVGn-FPFWPCMITVDPe-sRIYYKVKvrt-------ksvIMMVHVHYFGdKGRHSWVSanCMMQFTSla--- 200  Trachymyrmex ...
XP_015119927  154 VGELAWAHVSn-YPYWPCIVTEDPi-dKTHLKQKpfg-------qriIKMVHVTYFGdNGRHNWVNenSLMKFEGlk--- 221  Diachasma all...
XP_002429463  972 PGDLVWARFAg-NPFWPGLILRDPfnnDEYSKVKylg-------rlpRPFVHVQFLAdWGRRAWGPelYIMSFTGmd--- 1040 human body louse
EAT37605      461 SGQLLWAAFNakTPHWPCMLSPDPe-sGQITKPFlskl------shtKHMLHVKFFAdNGRRAWIKenQVLPYGTvd--- 530  yellow fever ...
Q8MT36        395 VGDLFWGKVFs-YCFWPCMVCPDPl-gQIVGNMPshpqrssldnanvPIQVHVRFFAdNGRRNWIKpeNLLTFAGlk--- 469  fruit fly
KFB46345      266 VGEIYWGAQTqkTIHWPCIVRIDPd-tNQIIRMRs-----------nQREVHVAYFGdRGRRGWVReaYIASFRGla--- 330  Anopheles sin...
Feature 1                          ###  ##                           
5VC8_A         80 qFEKLCQEsak---qapTKAEKIKLlkpi--sgklRAQWEXGIVQAEEAAS 125  human
GBP05889       88 vAREKFKSed------kKKDPKLYAaffv--sekkQHKWNISVEEAESFLR 130  Eumeta japonica
PNF15991      302 aFNKSAVKih-----sqMKKRDRKFaaafhvppkaKAKWDIAVREAEEAMG 347  Cryptotermes secundus
RZF33032      320 aFEELSQSils---amkRKDPRQVSalvv--kpnlKSVWESAVNEAESLLL 365  small brown planthopper
KYQ49107      201 dFQKLAESltt---dtkKKDPKYVAafvv--kpgiKKKWQNAVKEATETQP 246  Trachymyrmex zeteki
XP_015119927  222 hFNDLATEll------kGRKKCTKFysgfvvktviKHKWDIAVSEAEVLLP 266  Diachasma alloeum
XP_002429463 1041 nFEKMKWDlpevntftqRKDLLYQQaffi--pkrmEKHWMRAVKEGEALLC 1089 human body louse
EAT37605      531 qYKAIVDKqfp---slrHKLVKLEQ----------RGIWLEAVRQANDTLS 568  yellow fever mosquito
Q8MT36        470 aFDDMREElr------iKHGPKSAKyrqmvpkrtkVVIWRQAIEEAQAMTQ 514  fruit fly
KFB46345      331 dYCARVENyeyg--kvvKAALKAAL----------RQNWKVATQQAEEFNA 369  Anopheles sinensis

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