4EDU,2BIV,1OI1


Conserved Protein Domain Family
MBT_SCML2_rpt1

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cd20106: MBT_SCML2_rpt1 
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first malignant brain tumor (MBT) repeat found in sex comb on midleg-like protein 2
Sex comb on midleg-like protein 2 (SCML2) is a homolog of Drosophila Sex comb on midleg (Scm). It is a component of PRC1 (Polycomb repressive complex 1), which acts as an E3 ubiquitin ligase, both for histone H2A to silence transcription and for geminin to regulate its stability. SCML2 is a germline-specific Polycomb protein that acts as a critical regulator of heterochromatin organization in spermatogenesis. SCML2 contains two MBT (malignant brain tumor) repeats. The MBT repeat is a protein module that recognizes methylated lysine residues on histones. MBT repeats contain a semi-aromatic cage to accommodate methyllysine and show specificity towards the lower methylation states of lysine. This model corresponds to the first MBT repeat that does not contain a semi-aromatic cage and may not bind methylated lysine residues.
Statistics
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PSSM-Id: 439096
Aligned: 10 rows
Threshold Bit Score: 213.632
Created: 8-Jan-2019
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4EDU_A        26 QSQIPPVNDFKVGMKLEARDPRNaTSVCIATVIGITGARLRLRLDGSDNRNDFWRLVDSPDIQPVGTCEKeGDLLQPPLG 105 human
2BIV_A        54 QSQIPPVNDFKVGMKLEARDPRNaTSVCIATVIGITGARLRLRLDGSDNRNDFWRLVDSPDIQPVGTCEKeGDLLQPPLG 133 human
1OI1_A        32 QSQIPPVNDFKVGMKLEARDPRNaTSVCIATVIGITGARLRLRLDGSDNRNDFWRLVDSPDIQPVGTCEKeGDLLQPPLG 111 human
Q9UQR0        54 QSQIPPVNDFKVGMKLEARDPRNaTSVCIATVIGITGARLRLRLDGSDNRNDFWRLVDSPDIQPVGTCEKeGDLLQPPLG 133 human
KFP50920      31 QSRIPPTNDFKVGMKLEAHDPRNvTSVCIATVIGITGARLRLRLDGSDNKNDFWRLVDSSDIQPIGTCEKkGGMLQPPLG 110 turkey vulture
NP_001089967  30 QSRTPPRNDFKIGMKLEAHDPRNvTSVCIATVIGITGARLRLRLDGSDDKNDFWRLVDSCDIQQIGTCEKkGDMLQPPLG 109 African clawed ...
CDQ87234      37 QSRVPPSNDFKVGMKLEVHDPRNsTSVCIATVMGMTGVRLRLRLDGSDNTNDFWRLVDSSDIQPIGTCEKnGDMLQPPLG 116 rainbow trout
XP_014345044  52 QPRTPPSNDFKVGMKLEAHDPRNiTSVCIATVIGITGARLRLRLDGSDNKNDFWRLVDSSDIQPIGTCEKrSDMLQPPLG 131 coelacanth
XP_007889868  55 QPRSPPTNEFKIDMKLEAQDPRNvTSICIATVVGITGARLRLRLDGSDNKNDFWRLVDSSDIQPIGTCEKnDGMLQPPLG 134 elephant shark
NP_001277581  31 QSKTPPTNEFKIGMKLEARDPRNiDSVCVASVIGITGARLRLRLDGSDNKNDFWRLVDSSDIQPVGTCEQgGDLLQPPLG 110 house mouse
4EDU_A       106 YQMNtSSWPMFLLETLNG 123 human
2BIV_A       134 YQMNtSSWPMFLLKTLNG 151 human
1OI1_A       112 YQMNtSSWPMFLLETLNG 129 human
Q9UQR0       134 YQMNtSSWPMFLLKTLNG 151 human
KFP50920     111 FQMNaSSWPMFLLRTLNG 128 turkey vulture
NP_001089967 110 FRMNaSSWPMFLLKTLNG 127 African clawed frog
CDQ87234     117 FRMNaSSWPMFLLRTLNG 134 rainbow trout
XP_014345044 132 FRMNaSSWPMFLLRTLNG 149 coelacanth
XP_007889868 135 FRMNaSSWPMFLLRTLNG 152 elephant shark
NP_001277581 111 YTLNtSSWPMFLLRVLTG 128 house mouse
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