4L59,2PQW,4FL6,2RHI


Conserved Protein Domain Family
MBT_L3MBTL1-like_rpt2

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cd20102: MBT_L3MBTL1-like_rpt2 
Click on image for an interactive view with Cn3D
second malignant brain tumor (MBT) repeat found in the Lethal(3)malignant brain tumor-like protein 1 (L3MBTL1)-like family
The L3MBTL1-like family includes L3MBTL1, L3MBTL3, and L3MBTL4. L3MBTL1, also called L(3)mbt-like, or L(3)mbt protein homolog, is a Polycomb group (PcG) protein that functions as a 'reader' of a network of post-translational modifications by specifically recognizing and binding mono- and dimethyllysine residues on target proteins. It acts as a chromatin compaction factor by binding mono- and dimethylated histone H1b/HIST1H1E at 'Lys-26' (H1bK26me1 and H1bK26me2) and histone H4 at 'Lys-20' (H4K20me1 and H4K20me2), leading to condensed chromatin and repressed transcription. L3MBTL3, also called L(3)mbt-like protein 3, or MBT-1, is a PcG protein that recognizes mono- and dimethylated lysine residues on histone tails. It also acts as a methyl-binding protein that binds the K142-methylated DNMT1 and recruits a novel CRL4(DCAF5) ubiquitin ligase to degrade DNMT1. L3MBTL4, also called L(3)mbt-like protein 4, or L3mbt-like 4, is a PcG protein that may act as a tumor suppressor. Members of this family contain three MBT (malignant brain tumor) repeats. The MBT repeat is a protein module that recognizes methylated lysine residues on histones. MBT repeats contain a semi-aromatic cage to accommodate methyllysine and show specificity towards the lower methylation states of lysine. This model corresponds to the second MBT repeat that contains the semi-aromatic cage that binds methylated lysine residues.
Statistics
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PSSM-Id: 439092
Aligned: 32 rows
Threshold Bit Score: 143.922
Created: 8-Jan-2019
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
methyllysine
Conserved site includes 7 residues -Click on image for an interactive view with Cn3D
Feature 1:methyllysine peptide binding site [polypeptide binding site]
Evidence:
  • Comment:MBT repeat proteins use a semi-aromatic cage to accommodate methyllysine and show specificity towards the lower methylation states of lysine.
  • Structure:2PQW; Homo sapiens L3MBTL1 in complex with H4k20me2 peptide through its second MBT repeat, contacts at 4A
  • Structure:2RHI; Homo sapiens L3MBTL1 in complex with H1.5k27me2 through its second MBT repeat, contacts at 4A
  • Structure:4FL6; Homo sapiens L3MBTL3 binds UNC1215, a potent and selective chemical probe for methyllysine; contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                      #  #       # #                      #  #   #                       
4L59_A        141 PSGFRVGMKLEAVDKKNPs-----FICVATVTDMv-------DNRFLVHFDNWdeSYDYWCEAsSPHIHPVGWCKEhRRT 208  human
2PQW_A        143 PLGFQVGMKLEAVDRMNPs-----LVCVASVTDVv-------DSRFLVHFDNWddTYDYWCDPsSPYIHPVGWCQKqGKP 210  human
VDP84152      418 THEFRVGYKLEAVDKRNPa-----AVCVATINDRi-------GDYVLVHFDGWdcGFDQWAHIsSPLLHPVGYCEEhELI 485  Echinostoma c...
XP_002606484 1413 NNKWQATMRLESKDKQNPt-----MICVSTVMKVeppsaehkKTRVHIHFDGWtdMFDYWADVdDPALHPLGYCKAnRIT 1487 Florida lancelet
XP_004989701  492 EETIEPGMKLEAVDRKNPg-----LVCVATILEIdn----srPDCLHIRFDGWtdRYDYWADPtSTDLRPVGWCEHnSHT 562  Salpingoeca r...
XP_004346955  317 ENRFQVGMRLEAADVMPGs----lLTCVATVATVr-------GAFVHITFDGWsdKYDYWVPCnSSALHPRGWCAAnNIL 385  Capsaspora ow...
XP_011407373  108 LRLFRVGMRLEAKDRANPa-----LICVATITDIn-------DNKLLIHFDGWsnRYDYWCDPdTVDIHPIGWCASkGIH 175  Amphimedon qu...
XP_019851431  357 VRKLEVNMKLEALDRRFPy-----YVCVATIIQKr-------GNEVKIHFDGWtdAYDYWCPTdAIELHPVGWCEKnNWE 424  Amphimedon qu...
XP_002606484 1630 SAPLQIGMRMEADDPLGSgeaknhLVCVANIKDMvte--adgRQKIEVHFDGWtnKYNYWCYTdDPKIHPIGYCAFkGIN 1707 Florida lancelet
XP_018654577   73 PHMFAVGLKLEAIDKRNPs-----LACVATIKDCi-------GDHILIHFDGWdsGFDQWAHIsSELLHPVGYCEDhEQV 140  Schistosoma m...
Feature 1                                 
4L59_A        209 LITPPGYpn-vKHFSWDKYLEETN 231  human
2PQW_A        211 LTPPQDYpd-pDNFCWEKYLEETG 233  human
VDP84152      486 LSIPVDWttkpCGFTWDQYLKETN 509  Echinostoma caproni
XP_002606484 1488 LQKPHGYs---RQFDWEQYLKEEN 1508 Florida lancelet
XP_004989701  563 LQIPRGYs---KRFDWQQYLRETN 583  Salpingoeca rosetta
XP_004346955  386 LQPPKSR----SNWSWEAYVQEIL 405  Capsaspora owczarzaki ATCC 30864
XP_011407373  176 LQPPHGRh---GRFTWEVYLQEVG 196  Amphimedon queenslandica
XP_019851431  425 LQKPRGM----PWTNWNKYITDTQ 444  Amphimedon queenslandica
XP_002606484 1708 LQKPKGYs---GTFEWDSYLDKIE 1728 Florida lancelet
XP_018654577  141 LSIPSDWsnrrNGFSWKLYLKETN 164  Schistosoma mansoni

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