4EDU,2P0K,2R57


Conserved Protein Domain Family
MBT_dScm-like_rpt2

?
cd20092: MBT_dScm-like_rpt2 
Click on image for an interactive view with Cn3D
second malignant brain tumor (MBT) repeat found in the Polycomb protein sex comb on midleg family
The Sex comb on midleg (Scm) family of Polycomb proteins includes Drosophila melanogaster Scm protein, as well as two vertebrate homologs of Scm, Polycomb protein sex comb on midleg homolog 1 (SCMH1) and sex comb on midleg-like protein 2 (SCML2). Scm is a putative zinc finger protein that functions as a transcriptional regulator which represses multiple homeotic genes during embryonic stages. It coordinates Polycomb group (PcG) complexes, PRC1 (PcG-repressive complex 1) or PRC2 (PcG-repressive complex 2), and polymerizes to produce broad domains of PcG silencing. Both SCMH1 and SCML2 are components of PRC1, which acts as an E3 ubiquitin ligase both for histone H2A to silence transcription and for geminin to regulate its stability. SCMH1 provides the complex with an interaction domain for geminin. SCML2 is a germline-specific Polycomb protein that acts as a critical regulator of heterochromatin organization in spermatogenesis. Members of this family contain two MBT (malignant brain tumor) repeats. The MBT repeat is a protein module that recognizes methylated lysine residues on histones. MBT repeats contain a semi-aromatic cage to accommodate methyllysine and show specificity towards the lower methylation states of lysine. This model corresponds to the second MBT repeat that contains the semi-aromatic cage that binds methylated lysine residues.
Statistics
?
PSSM-Id: 439082
Aligned: 12 rows
Threshold Bit Score: 147.888
Created: 8-Jan-2019
Updated: 17-Oct-2022
Structure
?
Program:
Drawing:
Aligned Rows:
 
methyllysine
Conserved site includes 11 residues -Click on image for an interactive view with Cn3D
Feature 1:methyllysine peptide binding site [polypeptide binding site]
Evidence:
  • Structure:4EDU; Homo sapiens SCML2 in a complex with histone H2A modified peptide through its second MBT repeat, contacts at 4A
  • Comment:MBT repeat proteins use a semi-aromatic cage to accommodate methyllysine and show specificity towards the lower methylation states of lysine.

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                       #  # # # #               #  #   #                         ###
4EDU_A       139 PPLNNFKVGMKLEAIDKKNPY-LICPATIGDVkGDEVHITFDGWsGAFDYWCKYdSRDIFPAGWCRLtGDVLQPPG 213  human
2P0K_A       136 PSHNFFKMGMKLEAVDRKNPH-FICPATIGEVrGSEVLVTFDGWrGAFDYWCRFdSRDIFPVGWCSLtGDNLQPPG 210  human
2R57_A       139 PEENLFKVGQKLEAVDKKNPQ-LICCATVDAIkDDQIHVTFDGWrGAFDYWCNYrSRDIFPAGWCARsCHPMQPPG 213  fruit fly
PAA87305     168 PVKNTFSAGQKLEAVDRKNPL-FVCPATVKEVrGDRVHVAFDGWrGAFDYWCRFdSRDLFPVGWCGRaGYPVQPPG 242  Macrostomum lignano
RMX55369     309 PKENMFKVGMKLEALDPKNPL-LICVATVADVdGDRIRVDFDGY-LGSDYWCRYdSRDIFPVGWCHLsGHPLQPPG 382  Pocillopora damico...
RDD44572     480 PEKNMFEVGMKLEAVDNKNPQ-CICVATVANVdKDKIKISFDGWnNTSDYWCSYlSRDIFPVGWCKKsKHPLQTAK 554  Trichoplax sp. H2
KPM04847     146 PEKNMFEVGMKLEAVDIKHPS-NICPATIKNVdNNMVEIHLDGWdQMNDFRCLYySRSLFPVGWCKKtGHTLQFPG 220  Sarcoptes scabiei
VDM20994     249 PRKNTFQVGMKCEAIDRKNFNgRPCPATVVDVkGDYLTISYDGWnKAYDCKERYdSRFIFPVGWAAKsGLEVQPPN 324  Wuchereria bancrofti
XP_005174217 137 PLQNTFRAGLKLEAVDRKNPY-LICPATVGEVkGEELFVMFDGWrGAFDYWCRYdSRDLFPVGWCSAtQHGLQPPG 211  zebrafish
XP_009304396 167 PTQNFFKAGMKLEAVDRKNPY-LICPATIGEVrGDKIFIMFDGWrGAFDYWCQFdSRDIFPVGWCQLtNHSLQPPG 241  zebrafish
NP_001071811 169 PDENMFEVGMKLEAIDRKNPH-LICPATIGDVdGDQVFISFDGWrGTFDYWATYdSRDLFPVGWCNInDHPIQQPG 243  vase tunicate
XP_018654105 193 PEDNYFQVNDKLEAVDRRNTQ-LICPASVGAVnGHHILINFDGWsGAFDYWARFdSRELFPVGWCKSaNYPLQPPG 267  Schistosoma mansoni

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap