4EDU,2P0K,2R57


Conserved Protein Domain Family
MBT_dScm-like_rpt1

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cd20091: MBT_dScm-like_rpt1 
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first malignant brain tumor (MBT) repeat found in the sex comb on midleg family
The sex comb on midleg (Scm) family of Polycomb proteins includes Drosophila melanogaster Scm protein, as well as two vertebrate homologs of Scm, sex comb on midleg homolog 1 (SCMH1) and sex comb on midleg-like protein 2 (SCML2). Scm is a putative zinc finger protein that functions as a transcriptional regulator which represses multiple homeotic genes during embryonic stages. It coordinates Polycomb group (PcG) complexes, PRC1 (PcG-repressive complex 1) or PRC2 (PcG-repressive complex 2), and polymerizes to produce broad domains of PcG silencing. Both SCMH1 and SCML2 are components of PRC1, which acts as an E3 ubiquitin ligase both for histone H2A to silence transcription and for geminin to regulate its stability. SCMH1 provides the complex with an interaction domain for geminin. SCML2 is a germline-specific Polycomb protein that acts as a critical regulator of heterochromatin organization in spermatogenesis. Members of this family contain two MBT (malignant brain tumor) repeats. The MBT repeat is a protein module that recognizes methylated lysine residues on histones. MBT repeats contain a semi-aromatic cage to accommodate methyllysine and show specificity towards the lower methylation states of lysine. This model corresponds to the first MBT repeat that does not contain a semi-aromatic cage and may not bind methylated lysine residues.
Statistics
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PSSM-Id: 439081
Aligned: 19 rows
Threshold Bit Score: 178.649
Created: 8-Jan-2019
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4EDU_A        26 QSQIPPVNDFKVGMKLEARDPRNaTSVCIATVIGItGARLRLRLDGSDnRNDFWRLVDSPDIQPVGTCEKeGDLLQPPLG 105  human
2P0K_A        23 QSYTPPSNEFKISMKLEAQDPRNtTSTCIATVVGLtGARLRLRLDGSDnKNDFWRLVDSAEIQPIGNCEKnGGMLQPPLG 102  human
2R57_A        26 QAQNPPNNDFKIGMKLEALDPRNvTSTCIATVVGVlGSRLRLRLDGSDsQNDFWRLVDSTEIHAIGHCEKnGGMLQPPLG 105  fruit fly
XP_006817556  40 QPSSPPANEFKVGMKLEAQDPRNiTSTCVATIVGLqGPRVRLRLDGGDnKNDFWRLVDSSDIKPIGWCEKhGGLLQPPLG 119  Saccoglossus k...
EFX76808     162 QHAKPPTNEFLFGVKLEAQDPRNlTSTCIATVVAViGPRLRLRLDGSDnKNDFWRLVDSNDIHPIGHCESsGGMLQPPLG 241  common water flea
PIK45721      54 QNPEVPQNEFLLNVKLEAQDPRSsTATCIATVVGIqGPRLRLRLDGSDnKNDFWRLVDSSDIKPVGKCEAnGGMLQPPLG 133  Japanese sea c...
RDD44572     367 QPEEPPVNKFRIGLKLESADPRSpACTCLATVVDTlGSRIRLRLDGCDnQNDFWRQVDSADIHPIGWCESnSEMIQPPLN 446  Trichoplax sp. H2
RMX55369     182 QAQVPPYNGFQCSMKLEVADPRIvDTICVATVVGIlGPRIRCRFDGTDsANDVWHLVDSREIHPVGWCEGnGGRLQPPVG 261  Pocillopora da...
NP_001071811  56 SDKIPLDNKFEVSQKLETTDARNpSAISVATIVAIqGPRLCLRLDGTDgCNDFWRLCDSKDIFPLGTCAAhGGLLQPPLG 135  vase tunicate
XP_015791935 240 QHPDPPANEFRLKMKLEAQDPRNpSSTCIATVVGImGPRVQLRLDGSDnTNDFWEMIDSPSIKPVGHCQEnGGMLQPPLG 319  two-spotted sp...
4EDU_A       106 YQMNtSSWPMFLLETLN 122  human
2P0K_A       103 FRLNaSSWPMFLLKTLN 119  human
2R57_A       106 FCMNaSSWPGYLCKILN 122  fruit fly
XP_006817556 120 FRMNaSSWPMFLLRTLN 136  Saccoglossus kowalevskii
EFX76808     242 FRMNaSSWRTFLSKTLT 258  common water flea
PIK45721     134 FRMNaSSWPLFLQRTLT 150  Japanese sea cucumber
RDD44572     447 CLKNpSNWSEFVKKTLN 463  Trichoplax sp. H2
RMX55369     262 FHLDpGKYSTFLAKTLA 278  Pocillopora damicornis
NP_001071811 136 FTKNvSTWPSFLQRTLQ 152  vase tunicate
XP_015791935 320 FRKNpSHWPMFVLNTLK 336  two-spotted spider mite
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