2JNW,2JPD,2A1I


Conserved Protein Domain Family
XPF_nuclease_ERCC1

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cd20079: XPF_nuclease_ERCC1 
XPF-like nuclease domain of DNA excision repair protein ERCC1
ERCC1 is a non-catalytic component of a structure-specific DNA repair endonuclease responsible for the 5'-incision during DNA repair. In conjunction with SLX4, ERCC1 is responsible for the first step in the repair of interstrand cross-links (ICL), as well as for homology-directed repair (HDR) of DNA double-strand breaks. ERCC1 participates in the processing of anaphase bridge-generating DNA structures, which consist in incompletely processed DNA lesions arising during S or G2 phase, and can result in cytokinesis failure. ERCC1 also plays a critical role in targeting the XPF-ERCC1 complex to DNA. XPF-ERRC1 and its yeast homolog Rad1-Rad10 play key roles in the excision of DNA lesions and are required for certain types of homologous recombination events and for the repair of DNA cross-links. The critical motif, DX(n)ERKX(3)D, for endonuclease activity is absent in the nuclease domain of ERCC1.
Statistics
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PSSM-Id: 410855
Aligned: 20 rows
Threshold Bit Score: 218.395
Created: 17-Dec-2018
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
peptide binding
Conserved site includes 16 residues -Click on image for an interactive view with Cn3D
Feature 1:peptide binding site [polypeptide binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              ######                            ### ##  ##  #   #                 #     
2JNW_A        19 SIIVSPRQRGNPVLKFVRNVPWEFGDVIPDYVLGqSTCALFLSLRYHNLHPDYIHGRLQSLGknFALRVLLVQVDVkDPQ 98  human
XP_019641929 179 SIIINPRQKGNPVIKNIRNVAWEFGDVIPDYVLGkTSCALFLSLRYHHLHPNYIHDRLQQLGrsYMLRILLVQVDVaDPH 258 Belcher's lancelet
NP_001080498  99 CILVSTRQRGNSLLKYLRNVPWEFSDIVPDYILGeTCCSLFLSLRYHNLNPEYIHSRLRSLGqsFALRVLLVQVDVkDPH 178 African clawed ...
PIK39482     153 CILVNPRQRGNPILKSVRNIPWEFGDIVPDYVMGrTICALFLSLRYHHLNPNYIHSRLKELGnnYELRILLVQVDVkDPH 232 Japanese sea cu...
RDD37384      57 CITVNPKQRGNPIIQYITSVPLEYGDIVPDYVLGkTTCALYLSLRYHNLHPNYIHERLKKLGyaFEMRILLVQVDLkDCQ 136 Trichoplax sp. H2
PVD37947     189 SLLVNPRQKGNPILKYVRSVPWEFGNIVPDYVMGqSNCALFLSLRYHQLHPEYIHTRLKQLGhsFDLRVLLVHVDLkEPH 268 Pomacea canalic...
KXJ26818     155 AIQVNPRQKANPVLKFIRCVPWEFSDIVPDYVMGvTTCALFLSLRYHHFNPNYIHERLKQLGksYELRILLVLVDVkDPH 234 Exaiptasia pallida
XP_006812731  35 SIIVNTKQKGNPILKHIRNVSWEYGDIVADYVMGkTTCALYLSIRYHNLKPDYIHDRLKQLGhsYELRILLVQVDVkDPH 114 Saccoglossus ko...
KFM81892     123 ALLVNPRQRGNPLLKSIRNVPWEFSEIEPDYVMGkTACALFLSLRYHNLFPNYIHERLKALGktYSLRVLLVQVDVaEPN 202 Stegodyphus mim...
KRT81400      49 CLLVNPKQKGNPLLKSVRNVPWEYDDIVPDYQMGrSVCALFLSLRYHNLNPDYIHDRLKLLGqsFELRVLLVLVDIpDPH 128 Oryctes borbonicus
Feature 1                                           
2JNW_A        99 QALKELAKMCILADCTLILAWspEEAGRYLETYKA 133 human
XP_019641929 259 YSLKELAKMCILADCTLILAWsaEEAGKYLETYKA 293 Belcher's lancelet
NP_001080498 179 FSLKELAKICILSDCTLILSWspEEAARYLETYKC 213 African clawed frog
PIK39482     233 YSLKELARMAILAECTLILAWspEEAGRYLETYKS 267 Japanese sea cucumber
RDD37384     137 QALNELARIAVMADCTLILAWssEEAGRYLETYKA 171 Trichoplax sp. H2
PVD37947     269 HLVKDLAKICILADCTLMLAFsvEEAGRYLETYKI 303 Pomacea canaliculata
KXJ26818     235 QTLRELAKMAILADLTLMLSWssEEAGKYLEIYKV 269 Exaiptasia pallida
XP_006812731 115 HAVKDLTKIAIRSDCTLILAWtpEEVGRYLETYKS 149 Saccoglossus kowalevskii
KFM81892     203 PPLKDLSVIAILADCTLMVSWsaEEAGNYLETYKM 237 Stegodyphus mimosarum
KRT81400     129 HALKHLTRICILADMTMILAWspEEAGKIIETYKI 163 Oryctes borbonicus

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