Conserved Protein Domain Family
XPF_nuclease_XPF_euk

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cd20078: XPF_nuclease_XPF_euk 
nuclease domain of XPF found in eukaryotes
XPF, also called DNA excision repair protein ERCC-4, or DNA repair protein complementing XP-F cells, or Xeroderma pigmentosum group F-complementing protein, is a DNA repair endonuclease that is a catalytic component of a structure-specific DNA repair endonuclease responsible for the 5-prime incision during DNA repair. It is involved in homologous recombination that assists in removing interstrand cross-link. The nuclease domains of the catalytic subunits XPF have the GDX(n)ERKX(3)D motif which is required for metal-dependent endonuclease activity but not for DNA junction binding. XPF-ERRC1 and its yeast homolog Rad1-Rad10 play key roles in the excision of DNA lesions and are required for certain types of homologous recombination events and for the repair of DNA cross-links.
Statistics
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PSSM-Id: 410854
Aligned: 112 rows
Threshold Bit Score: 125.677
Created: 15-Nov-2018
Updated: 25-Oct-2021
Structure
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Aligned Rows:
 
Feature 1: active site [active site], 6 residue positions
Conserved feature residue pattern:G D E R K DClick to see conserved feature residue pattern help
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                           ##            ###   #                         
Q92889        683 SIVVDMREFRSELPSLIHr---rGIDIEPVTLeVGDYILTp---EMCVERKSISDLIGSLNnGRLYSQCISMSRy-YKRP 755  human
KCZ81357      122 NVIIDVREMRSSLPFSMYk---kGISLEICTLsVGDYFIN----SVCVERKEINDLIGSLNsGRLFNQVNHLINa-FSSP 193  Anncaliia alg...
XP_011129637  697 VVLVDVRELRASLPFELWk---aGVKLRPLTMeTSDYILTp---KIGIERKAVNDLIKSLAnGRLLSQVQRLVAt-FAQP 769  Gregarina nip...
KRH95318      599 NITVDFRELRSSLPFYLHk---yGNQLDISCLsEGDYILNt---DIIIERKNIFDLIGSFNnGRLFHQLLRLIN--YKKV 670  Pseudoloma ne...
ELQ74038      568 NVLVDFRELRASLPFFLYk---aKNNLRVVCLeEGDYLFD----NFIVERKTVYDLIMSLNnGRLLSQMTRLFSn-HSNY 639  Trachipleisto...
OQS55870      500 NIFVDQRETRAKLPFVLYk---aGNILRLEVLlVGDYEFMvgnkKVLVERKSISDFISSTNtDRLYLQSKNMVAs-CDHP 575  Enterocytozoo...
XP_009493082  810 TVIIDVRELRATLPRALLe---aGMALRPMQLrEADYILGp---GFGIERKAPADLRQSIQgGRLAAQLTRMVRafPEGT 883  Fonticula alba
KWX13663      649 MLYIDNRELRSLVPVELFvl-skGLRLIVRQLtLGDYLLSs---TTAVERKSEQDLISSLRsDRLEDQLERLNAq-FSTS 723  Giardia intes...
EHY64677      217 LLEIDIRELRSSLPLYLAqkfnsQFRLEFKQLpVGDYILNk---SYYIERKRIDDFAGSLNnGRLMKQLQALDYi-RGSG 292  Nematocida sp...
OAG32315      506 VLSIDLHETRASLPVYLIkhfngLVKFNFSGLkHGDYVANg---TYFIERKRIDDLVVSLKnGRIIKQLKSITHf-YQDG 581  Nematocida di...
Feature 1                                                                                         
Q92889        756 VLLIEFDpskpfsltsr------galfqeissNDISSKLTLLTl------------hFPRLRILWCp-SPHATAELFEEL 816  human
KCZ81357      194 ILLIEFPnkmsl---------------feyckKSQILKFIVLLi------------nFPQLRILYSn-SDSLTIKCLMSL 245  Anncaliia alg...
XP_011129637  770 TLLIELPngrffygak--------dqsggksdPMLIPRLSVLMa------------gFPSLKFLWSydGGSFTPELFKIL 829  Gregarina nip...
KRH95318      671 YLLIEYDqglnlfk------------ytslnsFDLIAKFCLMTv------------rFHQLRYIHSn-SDILACRSIRAL 725  Pseudoloma ne...
ELQ74038      640 YLLIEYEnklslgay---------snrnetfrNGLISKFVLLAi------------kFPRLKFIYTn-NDLLSARLLRCL 697  Trachipleisto...
OQS55870      576 ILLLEFSgrktptfyahek--fnvygqvisakKSLVLKLCSLLy------------tFPKLKIIWSn-DEILTATYFRDV 640  Enterocytozoo...
XP_009493082  884 FLLLEVGprgga----------------grvtTWVLDRLVEILvhlsrplvlasgrrTHPVRLVWSr-SDRHAAELFAYL 946  Fonticula alba
KWX13663      724 YLMCAIPsershdlvridiqnnqsstntaskpLSLTARLFRLLr------------tYPTVRILWS--TDTTFAPLLMRL 789  Giardia intes...
EHY64677      293 YLLIEFPtetkisfm---------sytnrlqqIDLTSKIITLLe------------tMKTTYIFYSs-TERHSSALINAL 350  Nematocida sp...
OAG32315      582 YLLIEFTeltrtmsll-------kyaennfvyLNLNNQVVEIIr------------nNPTVKIFFSn-SEKASSMLIDYL 641  Nematocida di...
Feature 1           
Q92889        817 KQ 818  human
KCZ81357      246 EK 247  Anncaliia algerae PRA339
XP_011129637  830 KR 831  Gregarina niphandrodes
KRH95318      726 QK 727  Pseudoloma neurophilia
ELQ74038      698 QR 699  Trachipleistophora hominis
OQS55870      641 QK 642  Enterocytozoon hepatopenaei
XP_009493082  947 KS 948  Fonticula alba
KWX13663      790 KM 791  Giardia intestinalis assemblage B
EHY64677      351 AR 352  Nematocida sp. 1 ERTm2
OAG32315      642 LK 643  Nematocida displodere

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