Conserved Protein Domain Family
PBP1_ABC_HAAT-like

?
cd19988: PBP1_ABC_HAAT-like 
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids or peptides
This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Statistics
?
PSSM-Id: 380643
Aligned: 17 rows
Threshold Bit Score: 360.438
Created: 26-Dec-2018
Updated: 2-Oct-2020
Structure
?
Aligned Rows:
 
putative ligand
Feature 1:putative ligand binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to the periplasmic Leu/Ile/Val-binding protein with bound valine

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                     
CCX60555   30 KIGAVGpltgdssnGGTDELEGKEMAVedfneag-gvdgktIELVSEDDassasQSASAVTKLINQdkVVGIIGahnsac 108 Blautia hydrogenot...
OZC19525   32 KIGAIGpltgessiGGLDELDGKRMAVedfnakg-gingkkVELFSEDDasqpsQSAAAAMKLINQnkVVALVGaqnsac 110 Sporomusa silvacet...
GAP39849   27 KIGVYGplsgdaamVGQTMVEGIKLATkqineag-gidgrmIELVIEDDeqspkVAVSAVNKLVYDdkVMAVIGtvnssc 105 Anaerolineaceae ba...
SHN86696   29 KIGVFGpfsgdaaaMGGSEKDAVSLVIqeknaag-girgqqIEPVYADDggkpeEAVNTVKRLISRdeVLINIGsisspa 107 Bradyrhizobium sp....
OZC14641   36 KIGVIGpesggaaqLGQGQRKAIQLAVdeinaqk-lagdwkLEAYFEDDegnptKSASATNKLIQQsqVNVIIGaihssa 114 Sporomusa silvacet...
SEU09784   60 YIGSIDpmtggaasYGQEKIQGETLAVeeinaag-gilgmeVVLISEDSasqaaQAATVATKLITQneVVAIQGaqtsse 138 Clostridium lavalense
EHE95871   37 VLGCVGpltgnaaaSGLVQANAVEMAVneineaggidgrymIELVKEDDegvpaKSVTVTQKLVNQnkITALIGalnssc 116 [Clostridium] citr...
SHI08445   28 KIGIIEsisgaaaaYGDNHRKGTRLAIeeinnag-gfngqpIEFHAEDDrsdpaAGINAAKKLIAQqkVDAIVGssaslv 106 Alcaligenaceae bac...
PCK86549   38 RLGLVSpmsgpnarYGAFSLHGAELAVkeindag-gidgrkIEIFSADSqgtpvEGVSATRRLIDQdkVNYIIGdvsssv 116 Rhizobium sp. CCBA...
SOE94689   39 KIGVVSpqsgassrYGAYALKGAELAVnevnaag-gvlgkkLDLVQGDSqcvpaEGVSATQRMIRFdnVSIIIGdvcssv 117 Burkholderia sp. D7
Feature 1                       ##                                                            
CCX60555  109 tlaglevlnrYGVPMITPGSsaetvl----tsgceWISRAFPGddLQCKALLNYIEenq-dvdKIGVIYSNDdfGKGGLD 183 Blautia hydrogenot...
OZC19525  111 tlammeilskYKIPGVTPGSsspsit----nsgnqWITRAFPGdeIQAGALVNYAKnkm-nvkKIGVIYVNDdfGKGGFK 185 Sporomusa silvacet...
GAP39849  106 tlasmevtwdAEVPHITPISsgasit----nvgnpWIARIQASdlLQAGAIARYIVddl-gikKIACMYQSDdyGTGAME 180 Anaerolineaceae ba...
SHN86696  108 slaasqvsrqSETPQIVVGGtaqrit----tqgnkWVFRSPVPdtKLVSDLVDFIHdkfpkvsKFAFLYVNDdfGRGGFE 183 Bradyrhizobium sp....
OZC14641  115 tladmvitqrTGIPQLTAGStgasit----eqgnkWVFRTAVNdeFQANALLKYAKdvt-kvtKIATLTAADdyGQSGEK 189 Sporomusa silvacet...
SEU09784  139 tmaildilaeYGVPAVCPATspkig-----asgnaFINRCSPDdgLQVEALIKYAGesl-kldKIGVLYSNDdyGKGGYD 212 Clostridium lavalense
EHE95871  117 tiadmeitasSKIPQITPCSsaqsiv----eqgneFIFRTTATdtTHIKTLFKYFKekl-ngqKVAVLYESSdfGTGAFG 191 [Clostridium] citr...
SHI08445  107 tiaftkenerYKVPAVNGQAgsptvt----eqgykYTWRVNMTdgQLDSKAVEYFAsqk-gakRFAFLVENSdyGKPPTQ 181 Alcaligenaceae bac...
PCK86549  117 tlamqpvaedAGVLLLNAASsnpkitygagvggykWTFRNYPTdeNRALIVAKYAAeqr-gftKFAVLSVDSdyGRSAIT 195 Rhizobium sp. CCBA...
SOE94689  118 tlamqpvveqAGVLLLNAASsnpeityragvggykWTFRNYPTdeSRAAAVLEYAArkg--ytKFAVLSVDTdfGRGAIT 195 Burkholderia sp. D7
Feature 1                                                                                     
CCX60555  184 SITEAAeekg--kevVSESFanedkdmTAQLSKLRDegaeALFIWcqytpGALIMKQARGLgw--dVQFYSGtgtihedt 259 Blautia hydrogenot...
OZC19525  186 AISKAAeqqg--ievVSESFmgedkdmRTQLTKIKSanvdGLFIWcqyvpGSLIMKQAREMnw--nTQFYGStgilhpkt 261 Sporomusa silvacet...
GAP39849  181 VIVKVLkdeygielvANEAFepsaldmTPQLLSVQKsgaeALIMWnmyqqGALIAKQARDLgl--kIPLLGGggltnkkl 258 Anaerolineaceae ba...
SHN86696  184 AFKAAGakyg-feivDEERYtrgdidfTAQLGRIKAspaqAMVEWsryaeGALVAKQYVQSgl--nLVRFGSdgiatpkf 260 Bradyrhizobium sp....
OZC14641  190 LLIIAAqkeg-leltNKSTYnngdkdfKPQLLSIKDsgaqAIFMWglyndAALIAKQAKQLgl--nVQLFGAsgmaaqkl 266 Sporomusa silvacet...
SEU09784  213 SAVACVdkyg--velVSDSFmgddqnfSAQLTKIKDagceAILMWcqptpASLIMKQANDMgw--sPQYLCGpgvndprl 288 Clostridium lavalense
EHE95871  192 IIQALApeyg-idvvANEMYnsgekdfSVHLTKMKQaepdAIILWgyyteAALICKQAKQNgi--qAPLIGTgfnspklv 268 [Clostridium] citr...
SHI08445  182 AAADRAkkvg-atvtAYEQYnrgetdfKAQLSKIKEtspeVIFVHgyyteGSIIARQIKELgi--nATLIVNmgqgvpkf 258 Alcaligenaceae bac...
PCK86549  196 FTKKYLpdfk-geivSEDYYkegevdfRSVLAKIRDngaqAIIMYgladtTPIIARQMLELglagkVTLIGNgefntekt 274 Rhizobium sp. CCBA...
SOE94689  196 FTKKYLqryk-aqivSEDYYketeadfRPVLSKIKYsgaqAILMYgladtTPIVARQMHEMalggkIELVGNaeftnpst 274 Burkholderia sp. D7
Feature 1                                                                                     
CCX60555  260 fslsdgayygCINSVPfiststdpevqewv--dryeekygtppsqNSARAYDATMILLnaikaagstepeevqkairstk 337 Blautia hydrogenot...
OZC19525  262 felsggayagAINSVPfipnlpdpekqnwv--krykdkfgkepsqNSARAYDATMLLLeaikranstdpkviqeairttq 339 Sporomusa silvacet...
GAP39849  259 yelagdaavgIINSQTffadktkatpsaaafidafekeygklpdsNNAMAYDAMMVMAeglkyaapefkntkimegikav 338 Anaerolineaceae ba...
SHN86696  261 ielagsaadgIYFTAHfsvatssdipvakefvakfqkaygrvpdsYAAEAYDAITMAIkaveasdkldrasirdal--ak 338 Bradyrhizobium sp....
OZC14641  267 ielggdavqgLILTQTflpsspdqkvsefv--nkyknqyqedpipHAAQAYDTVYILAdavkkansnkpdalrdai-akt 343 Sporomusa silvacet...
SEU09784  289 felsnglcdkAILSTSfyadnpdeyvsawv--eryrqrwnmepslTASLGYDGMMIIFkgieaagsaepkaiaegirtlk 366 Clostridium lavalense
EHE95871  269 e-lggdavngLIFTTAfteanqdekvqafd--kkykeiyqqsydqNAPQAYDSVYLLAdavkragsldgqairdal-lat 344 [Clostridium] citr...
SHI08445  259 velagaaangAVFPTTwlpgldnekskkfe--eafkakynhepgaFEAGTYDSIYTVVeaakrgggsdpkqiqagl-akl 335 Alcaligenaceae bac...
PCK86549  275 iksapkvlegAVEAAAwlpafdspeskafv--ekftaayneapnnHAYVHWDTVHLLAqaikeagspdqakvrdal--sk 350 Rhizobium sp. CCBA...
SOE94689  275 iaaapdvmngAIETVAwlpswsdprslkfv--ddykkaygdvpnvHAYTHWESVHLLAdaikaagsvktadvraal--ak 350 Burkholderia sp. D7
Feature 1                                   
CCX60555  338 dydglqgnisidpktGEYQgdVMIVKAIEG 367 Blautia hydrogenotrophica CAG:147
OZC19525  340 dheglqgkisidksnGEYIgdVMIVKAETA 369 Sporomusa silvacetica DSM 10669
GAP39849  339 kdlplatgtismspnGDANrdILIIRLTEG 368 Anaerolineaceae bacterium TC1
SHN86696  339 vsfdssrgafkfddkGDPLlvTHVVKIVDG 368 Bradyrhizobium sp. CCBAU 53325
OZC14641  344 tglklvtgnpqfddkGNDIgkHLLITAIKG 373 Sporomusa silvacetica DSM 10669
SEU09784  367 dfqtlkgmasvdaatGNLQspVYLVTANNE 396 Clostridium lavalense
EHE95871  345 kdfegaagtynfasnGEMIkdLMVVQIVDG 374 [Clostridium] citroniae WAL-17108
SHI08445  336 egfeillgkisfdekNQNSgeVRLATFSNG 365 Alcaligenaceae bacterium BZ59
PCK86549  351 ikyksavgevtfddhNQARlpMILLQIEDG 380 Rhizobium sp. CCBAU 03470
SOE94689  351 ihyesvmgpvtfddhQQAVvpIVLLEVVNG 380 Burkholderia sp. D7

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap